5A1Y
The structure of the COPI coat linkage IV
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2021-05-27) |
I | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2021-05-27) |
J | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2021-05-27) |
Q [auth R] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2021-05-27) |
H | SCOP2B Superfamily | SNARE-like | 8082715 | 3001113 | SCOP2B (2021-05-27) |
P | SCOP2B Superfamily | SNARE-like | 8082715 | 3001113 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00025 | e5a1yA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00025 | ECOD (1.6) |
B | PF00025 | e5a1yB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00025 | ECOD (1.6) |
I | PF00025 | e5a1yI1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00025 | ECOD (1.6) |
J | PF00025 | e5a1yJ1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00025 | ECOD (1.6) |
Q [auth R] | PF00025 | e5a1yR1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00025 | ECOD (1.6) |
C | PF00400 | e5a1yC4 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
C | PF04053 | e5a1yC3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF04053 | ECOD (1.6) |
C | PF04053 | e5a1yC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04053 | ECOD (1.6) |
C | PF06957 | e5a1yC5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Coatomer subunit alpha C-terminal domain (From Topology) | T: Coatomer subunit alpha C-terminal domain | F: PF06957 | ECOD (1.6) |
C | PF06957 | e5a1yC6 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF06957 | ECOD (1.6) |
K | PF00400 | e5a1yK2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
K | PF04053 | e5a1yK4 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF04053 | ECOD (1.6) |
K | PF04053 | e5a1yK3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04053 | ECOD (1.6) |
K | PF06957 | e5a1yK5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Coatomer subunit alpha C-terminal domain (From Topology) | T: Coatomer subunit alpha C-terminal domain | F: PF06957 | ECOD (1.6) |
K | PF06957 | e5a1yK6 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF06957 | ECOD (1.6) |
D | PF00400 | e5a1yD2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
D | PF04053 | e5a1yD1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF04053 | ECOD (1.6) |
D | PF04053 | e5a1yD3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04053 | ECOD (1.6) |
L | PF00400 | e5a1yL3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
L | PF04053 | e5a1yL1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF04053 | ECOD (1.6) |
L | PF04053 | e5a1yL2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04053 | ECOD (1.6) |
E | PF08752 | e5a1yE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF08752 | ECOD (1.6) |
E | PF01602 | e5a1yE4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF01602 | ECOD (1.6) |
E | PF16381 | e5a1yE3 | A: a+b two layers | X: TBP-like | H: Subdomain of clathrin and coatomer appendage domain (From Topology) | T: Subdomain of clathrin and coatomer appendage domain | F: PF16381 | ECOD (1.6) |
M | PF01602 | e5a1yM1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF01602 | ECOD (1.6) |
R [auth V] | PF08752 | e5a1yV1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF08752 | ECOD (1.6) |
R [auth V] | PF01602 | e5a1yV3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF01602 | ECOD (1.6) |
R [auth V] | PF16381 | e5a1yV2 | A: a+b two layers | X: TBP-like | H: Subdomain of clathrin and coatomer appendage domain (From Topology) | T: Subdomain of clathrin and coatomer appendage domain | F: PF16381 | ECOD (1.6) |
F | PF01217 | e5a1yF1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF01217 | ECOD (1.6) |
N | PF01217 | e5a1yN1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF01217 | ECOD (1.6) |
S [auth W] | PF01217 | e5a1yW1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF01217 | ECOD (1.6) |
G | PF07718 | e5a1yG3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07718 | ECOD (1.6) |
G | PF01602 | e5a1yG2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF01602 | ECOD (1.6) |
G | PF14806 | e5a1yG1 | A: a+b two layers | X: TBP-like | H: Subdomain of clathrin and coatomer appendage domain (From Topology) | T: Subdomain of clathrin and coatomer appendage domain | F: PF14806 | ECOD (1.6) |
O | PF07718 | e5a1yO2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07718 | ECOD (1.6) |
O | PF01602 | e5a1yO3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF01602 | ECOD (1.6) |
O | PF14806 | e5a1yO1 | A: a+b two layers | X: TBP-like | H: Subdomain of clathrin and coatomer appendage domain (From Topology) | T: Subdomain of clathrin and coatomer appendage domain | F: PF14806 | ECOD (1.6) |
H | PF00928 | e5a1yH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: PF00928 | ECOD (1.6) |
H | PF01217 | e5a1yH3 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF01217 | ECOD (1.6) |
P | PF01217 | e5a1yP1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF01217 | ECOD (1.6) |
T [auth X] | PF04733 | e5a1yX1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04733 | ECOD (1.6) |
U [auth Z] | PF04733 | e5a1yZ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04733 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04053 | Coatomer WD associated region (Coatomer_WDAD) | Coatomer WD associated region | - | Repeat | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF04053 | Coatomer WD associated region (Coatomer_WDAD) | Coatomer WD associated region | - | Repeat | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
E, M, R [auth V] | PF01602 | Adaptin N terminal region (Adaptin_N) | Adaptin N terminal region | - | Repeat |
E, M, R [auth V] | PF16381 | Coatomer subunit gamma-1 C-terminal appendage platform (Coatomer_g_Cpla) | Coatomer subunit gamma-1 C-terminal appendage platform | Coatomer_g_Cpla is the very C-terminal domain of the eukaryotic Coatomer subunit gamma-1 proteins. It acts as a platform domain to the C-terminal appendage. It carries one single protein/protein interaction site, which is the binding site for ARFGAP2 ... | Domain |
E, M, R [auth V] | PF08752 | Coatomer gamma subunit appendage platform subdomain (COP-gamma_platf) | Coatomer gamma subunit appendage platform subdomain | COPI-coated vesicles function in retrograde transport from the Golgi to the ER, and in intra-Golgi transport. This is the platform subdomain of the coatomer gamma subunit appendage domain. It carries a protein-protein interaction site at U ... | Domain |
F, N, S [auth W] | PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | - | Domain |
PF01602 | Adaptin N terminal region (Adaptin_N) | Adaptin N terminal region | - | Repeat | |
PF14806 | Coatomer beta subunit appendage platform (Coatomer_b_Cpla) | Coatomer beta subunit appendage platform | This family is found at the C-terminus of the coatamer beta subunit proteins (Beta-coat proteins). It is a platform domain on the appendage that carries a highly conserved tryptophan. | Domain | |
PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | - | Domain | |