4YZ6

Crystal Structure of Myc3[44-238] from Arabidopsis in complex with Jaz1 peptide [200-221]

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Jas motif-like	8044830	4004163	SCOP2 (2021-05-27)
B	SCOP2 Superfamily	CCT motif-like	8053392	3002182	SCOP2 (2021-05-27)
A	SCOP2B Superfamily	GAF domain-like	8053394	3000080	SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF14215	e4yz6A1	A: a+b three layers	X: Profilin-like	H: sensor domains (From Topology)	T: sensor domains	F: PF14215	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF09425	Jas motif (Jas_motif)	Jas motif	-	Motif
A	PF14215	bHLH-MYC and R2R3-MYB transcription factors N-terminal (bHLH-MYC_N)	bHLH-MYC and R2R3-MYB transcription factors N-terminal	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Protein TIFY 10A	identical protein binding protein binding binding	regulation of defense response regulation of biological process response to stimulus regulation of response to stimulus defense response regulation of response to stress response to stress biological regulation response to wounding cellular response to stimulus regulation of cellular process response to lipid signaling regulation of jasmonic acid mediated signaling pathway regulation of defense response regulation of biological process response to stimulus regulation of response to stimulus defense response regulation of response to stress response to stress biological regulation response to wounding cellular response to stimulus regulation of cellular process response to lipid signaling regulation of jasmonic acid mediated signaling pathway regulation of signal transduction hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus response to hormone signal transduction cellular response to hormone stimulus regulation of signaling response to jasmonic acid response to fatty acid response to endogenous stimulus response to oxygen-containing compound jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus response to chemical cellular response to lipid regulation of cell communication cellular process developmental process multicellular organismal process reproductive system development reproductive process flower development developmental process involved in reproduction reproductive shoot system development multicellular organism development anatomical structure development reproductive structure development shoot system development post-embryonic development system development gametophyte development pollen development biological process involved in interspecies interaction between organisms response to other organism response to external stimulus response to biotic stimulus defense response to bacterium defense response to other organism response to bacterium response to external biotic stimulus response to alkaline pH cellular response to environmental stimulus response to pH cellular response to pH response to abiotic stimulus cellular response to alkaline pH cellular response to abiotic stimulus regulation of cellular response to alkaline pH	cell periphery plasma membrane membrane cellular anatomical entity membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
A	Transcription factor MYC3	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity protein binding protein dimerization activity transcription factor binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity protein binding protein dimerization activity transcription factor binding bHLH transcription factor binding DNA-binding transcription factor binding	regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process cellular metabolic process regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process cellular process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process anthocyanin-containing compound biosynthetic process pigment metabolic process flavonoid metabolic process anthocyanin-containing compound metabolic process flavonoid biosynthetic process pigment biosynthetic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of nucleobase-containing compound metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process response to lipid response to stimulus response to jasmonic acid response to hormone response to fatty acid response to chemical response to endogenous stimulus response to oxygen-containing compound developmental process multicellular organism development multicellular organismal process stomatal complex development plant epidermis development anatomical structure development post-embryonic development tissue development cellular response to stimulus cellular response to nitrogen compound cellular response to ATP signaling response to organophosphorus cell communication cellular response to endogenous stimulus signal transduction response to organic cyclic compound response to organonitrogen compound cellular response to organic cyclic compound response to nitrogen compound response to ATP response to purine-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to organonitrogen compound extracellular ATP signaling defense response response to stress	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR040390	TIFY/JAZ family	Family
B	IPR018467	CO/COL/TOC1, conserved site	Conserved Site
B	IPR010399	Tify domain	Domain
A	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	Domain
A	IPR045084	Transcription factor AIB/MYC-like	Family
A	IPR025610	Transcription factor MYC/MYB N-terminal	Domain
A	IPR036638	Helix-loop-helix DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.