4YPY
Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4ypya1 | Alpha and beta proteins (a/b) | alpha/beta knot | alpha/beta knot | tRNA(m1G37)-methyltransferase TrmD | automated matches | (Haemophilus influenzae Rd KW20 ) [TaxId: 71421 ], | SCOPe (2.08) |
A | d4ypya2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Haemophilus influenzae Rd KW20 ) [TaxId: 71421 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1280.10 | Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | SPOUT methyltransferase, trefoil knot domain | CATH (4.3.0) |
A | 1.10.1270.20 | Mainly Alpha | Orthogonal Bundle | Trp Operon Repressor | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01746 | tRNA (Guanine-1)-methyltransferase (tRNA_m1G_MT) | tRNA (Guanine-1)-methyltransferase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029026 | tRNA (guanine-N1-)-methyltransferase, N-terminal | Homologous Superfamily | |
IPR029028 | Alpha/beta knot methyltransferases | Homologous Superfamily | |
IPR016009 | tRNA methyltransferase TRMD/TRM10-type domain | Domain | |
IPR023148 | tRNA (guanine-N(1)-)-methyltransferase, C-terminal domain superfamily | Homologous Superfamily | |
IPR002649 | tRNA (guanine-N1-)-methyltransferase TrmD | Family |