4YMV
Crystal structure of an amino acid ABC transporter with ATPs
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | d4ymva_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | automated matches | automated matches | (Caldanaerobacter subterraneus subsp. tengcongensis MB4 ) [TaxId: 273068 ], | SCOPe (2.08) |
A [auth J] | d4ymvj_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | automated matches | automated matches | (Caldanaerobacter subterraneus subsp. tengcongensis MB4 ) [TaxId: 273068 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | ABC_tran | e4ymvA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
A [auth J] | ABC_tran | e4ymvJ1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
C [auth D] | BPD_transp_1 | e4ymvD1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type I ABC importer transmembrane domain fold (From Topology) | T: Type I ABC importer transmembrane domain fold | F: BPD_transp_1 | ECOD (1.6) |
D [auth C] | BPD_transp_1 | e4ymvC1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type I ABC importer transmembrane domain fold (From Topology) | T: Type I ABC importer transmembrane domain fold | F: BPD_transp_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A [auth J] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
C [auth D] | 1.10.3720.10 | Mainly Alpha | Orthogonal Bundle | MetI-like fold | MetI-like | CATH (4.3.0) |
D [auth C] | 1.10.3720.10 | Mainly Alpha | Orthogonal Bundle | MetI-like fold | MetI-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth J], B [auth A] | PF00005 | ABC transporter (ABC_tran) | ABC transporter | ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ... | Domain |
C [auth D], D [auth C] | PF00528 | Binding-protein-dependent transport system inner membrane component (BPD_transp_1) | Binding-protein-dependent transport system inner membrane component | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | ATP Binding Cassette (ABC) Transporters | Art(QN)2 amino acid importer |