4YCS | pdb_00004ycs

Crystal structure of putative lipoprotein from Peptoclostridium difficile 630 (fragment)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Type 1 solute binding protein-like	8091349	3000125	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Type 1 solute binding protein-like	8091349	3000125	SCOP2B (2022-06-29)
D	SCOP2 Family	ABC transporter system solute-binding protein-like	8050623	4006986	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Type 1 solute binding protein-like	8091349	3000125	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	Type 1 solute binding protein-like	8091349	3000125	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Type 1 solute binding protein-like	8091349	3000125	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Type 1 solute binding protein-like	8091349	3000125	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F		e4ycsF1	A: alpha arrays	X: Alpha-lytic protease prodomain-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F:	ECOD (v295.2)
E		e4ycsE1	A: alpha arrays	X: Alpha-lytic protease prodomain-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F:	ECOD (v295.2)
D	SBP_bac_1	e4ycsD1	A: alpha arrays	X: Alpha-lytic protease prodomain-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: SBP_bac_1	ECOD (v295.2)
C	Pentaxin	e4ycsC1	A: alpha arrays	X: Alpha-beta plaits	H: Protease propeptides/inhibitors	T: Protease propeptides/inhibitors	F: Pentaxin	ECOD (v295.2)
B	Cupin_1	e4ycsB1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Cupin_1	ECOD (v295.2)
A	Sigma70_r3	e4ycsA1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Sigma70_r3	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)
E	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)
D	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)
C	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)
B	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)
A	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF02608	ABC transporter substrate-binding protein PnrA-like (Bmp)	ABC transporter substrate-binding protein PnrA-like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Uncharacterized protein	-	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR028082	Periplasmic binding protein-like I	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR050957	BMP Lipoprotein	Family
A, B, C, D, E A, B, C, D, E, F	IPR003760	ABC transporter substrate-binding protein PnrA-like	Domain