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Crystal structure of TRIM24 PHD-bromodomain complexed with N-{6-[3-(benzyloxy)phenoxy]-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-3,4-dimethoxybenzene-1-sulfonamide (7b) External Resource: Annotation Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) B SCOP2B Superfamily Bromodomain 8084277 3001843 SCOP2B (2022-06-29) A SCOP2B Superfamily Bromodomain 8084277 3001843 SCOP2B (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) B Bromodomain e4ybmB2 A: alpha bundles X: Bromodomain-like H: Bromodomain (From Topology) T: Bromodomain F: Bromodomain ECOD (1.6) B PHD_1 e4ybmB1 A: few secondary structure elements X: RING/U-box-like H: RING/U-box-like T: FYVE/PHD zinc finger F: PHD_1 ECOD (1.6) A Bromodomain e4ybmA1 A: alpha bundles X: Bromodomain-like H: Bromodomain (From Topology) T: Bromodomain F: Bromodomain ECOD (1.6) A PHD_1 e4ybmA2 A: few secondary structure elements X: RING/U-box-like H: RING/U-box-like T: FYVE/PHD zinc finger F: PHD_1 ECOD (1.6)
Chains Accession Name Description Comments Source PF00439 Bromodomain (Bromodomain) Bromodomain Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3]. Domain PF00628 PHD-finger (PHD) PHD-finger PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. Domain
Chains Polymer Molecular Function Biological Process Cellular Component Transcription intermediary factor 1-alpha
Chains Accession Name Type IPR001965 Zinc finger, PHD-type Domain IPR018359 Bromodomain, conserved site Conserved Site IPR001487 Bromodomain Domain IPR019787 Zinc finger, PHD-finger Domain IPR011011 Zinc finger, FYVE/PHD-type Homologous Superfamily IPR019786 Zinc finger, PHD-type, conserved site Conserved Site IPR017907 Zinc finger, RING-type, conserved site Conserved Site IPR000315 B-box-type zinc finger Domain IPR013083 Zinc finger, RING/FYVE/PHD-type Homologous Superfamily IPR036427 Bromodomain-like superfamily Homologous Superfamily IPR003649 B-box, C-terminal Domain IPR001841 Zinc finger, RING-type Domain
Chains Drug Target   Associated Disease Pharos :  O15164