4WVP
Crystal structure of an activity-based probe HNE complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth E] | SCOP2B Superfamily | Trypsin-like serine proteases | 8038248 | 3000114 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | PF00089 | e4wvpE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: PF00089 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth E] | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth E] | PF00089 | Trypsin (Trypsin) | Trypsin | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth E] | IPR018114 | Serine proteases, trypsin family, histidine active site | Active Site |
A [auth E] | IPR009003 | Peptidase S1, PA clan | Homologous Superfamily |
A [auth E] | IPR033116 | Serine proteases, trypsin family, serine active site | Active Site |
A [auth E] | IPR001254 | Serine proteases, trypsin domain | Domain |
A [auth E] | IPR001314 | Peptidase S1A, chymotrypsin family | Family |
A [auth E] | IPR043504 | Peptidase S1, PA clan, chymotrypsin-like fold | Homologous Superfamily |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
B [auth I] | 3V2 | |
B [auth I] | 3V3 | |
B [auth I] | BTN | AA0117 :  N6-biotinyl-L-lysine MOD:00126 | : 
B [auth I] | NLB | Parent Component: LEU :  AA0117 |
B [auth I] | OIC | AA0117 | : 
B [auth I] | OMT | Parent Component: MET :  AA0117 , AA0251 :  N6-biotinyl-L-lysine MOD:00126 , L-methionine sulfone MOD:00256 |