4WOV

CRYSTAL STRUCTURE OF TYROSINE KINASE 2 JH2 (PSEUDO KINASE DOMAIN) COMPLEXED WITH BMS-066 AKA 2-METHOXY-N-({6-[3-METHYL-7-(METHYLAMINO)-3,5,8,10-TETRAAZATRICYCLO[7.3.0.0, 6]DODECA-1(9),2(6),4,7,11-PENTAEN-11-YL]PYRIDIN-2-YL}METHY L)ACETAMIDE

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4wovb_	Alpha and beta proteins (a+b)	Protein kinase-like (PK-like)	Protein kinase-like (PK-like)	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d4wova_	Alpha and beta proteins (a+b)	Protein kinase-like (PK-like)	Protein kinase-like (PK-like)	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Pkinase_Tyr	e4wovB1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: Pkinase_Tyr	ECOD (1.6)
A	Pkinase_Tyr	e4wovA1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: Pkinase_Tyr	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
B	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
A	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
A	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF07714	Protein tyrosine and serine/threonine kinase (PK_Tyr_Ser-Thr)	Protein tyrosine and serine/threonine kinase	Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosph ...	Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity [1]; Serine/threonine-protein kinases, tyrosine-protein kinases, and dual specificity protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins). This entry represents the catalytic domain found in a number of serine/threonine- and tyrosine-protein kinases. It does not include the catalytic domain of dual specificity kinases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Non-receptor tyrosine-protein kinase TYK2	protein tyrosine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding protein tyrosine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding non-membrane spanning protein tyrosine kinase activity angiotensin receptor binding protein binding signaling receptor binding type 1 angiotensin receptor binding G protein-coupled receptor binding growth hormone receptor binding cytokine receptor binding hormone receptor binding	cellular response to stimulus cellular response to nitrogen compound regulation of cellular process response to stimulus signaling response to peptide hormone cellular response to growth hormone stimulus cell surface receptor protein tyrosine kinase signaling pathway cell communication cellular response to endogenous stimulus response to hormone growth hormone receptor signaling pathway via JAK-STAT signal transduction enzyme-linked receptor protein signaling pathway cellular response to stimulus cellular response to nitrogen compound regulation of cellular process response to stimulus signaling response to peptide hormone cellular response to growth hormone stimulus cell surface receptor protein tyrosine kinase signaling pathway cell communication cellular response to endogenous stimulus response to hormone growth hormone receptor signaling pathway via JAK-STAT signal transduction enzyme-linked receptor protein signaling pathway cellular response to hormone stimulus regulation of biological process growth hormone receptor signaling pathway cell surface receptor signaling pathway response to endogenous stimulus biological regulation cellular response to peptide hormone stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound response to growth hormone cellular response to chemical stimulus response to chemical cellular process response to cytokine cytokine-mediated signaling pathway response to peptide cellular response to cytokine stimulus cellular response to interleukin-12 response to interleukin-12 interleukin-12-mediated signaling pathway biological process involved in interspecies interaction between organisms response to type II interferon cellular response to type II interferon response to biotic stimulus interferon-mediated signaling pathway response to stress innate immune response response to external biotic stimulus immune response response to other organism defense response type II interferon-mediated signaling pathway defense response to symbiont response to external stimulus immune system process defense response to other organism cell surface receptor signaling pathway via STAT cell surface receptor signaling pathway via JAK-STAT protein phosphorylation phosphorylation cellular metabolic process primary metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process multicellular organismal process positive regulation of cell population proliferation regulation of leukocyte activation regulation of cell activation positive regulation of cell activation T cell activation lymphocyte proliferation positive regulation of leukocyte activation regulation of immune system process positive regulation of immune system process regulation of leukocyte proliferation cell population proliferation positive regulation of T cell activation positive regulation of lymphocyte proliferation positive regulation of T cell proliferation regulation of cell population proliferation mononuclear cell proliferation regulation of leukocyte cell-cell adhesion positive regulation of leukocyte proliferation positive regulation of multicellular organismal process positive regulation of biological process positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation cell adhesion cell-cell adhesion positive regulation of mononuclear cell proliferation regulation of multicellular organismal process regulation of cell-cell adhesion positive regulation of cellular process T cell proliferation regulation of lymphocyte proliferation positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation regulation of T cell proliferation regulation of mononuclear cell proliferation regulation of lymphocyte activation cellular response to type I interferon type I interferon-mediated signaling pathway response to type I interferon protein localization regulation of localization cellular localization regulation of protein localization positive regulation of protein localization to nucleus regulation of protein localization to nucleus protein localization to nucleus localization regulation of cellular localization cellular macromolecule localization macromolecule localization protein localization to organelle positive regulation of protein localization developmental process cellular developmental process cell differentiation interleukin-23-mediated signaling pathway adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of T-helper 17 type immune response regulation of adaptive immune response positive regulation of T-helper 17 type immune response adaptive immune response positive regulation of response to stimulus regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of response to stimulus positive regulation of immune response regulation of immune response positive regulation of adaptive immune response T-helper 17 type immune response response to type III interferon type III interferon-mediated signaling pathway cellular response to type III interferon positive regulation of natural killer cell proliferation regulation of natural killer cell activation positive regulation of natural killer cell activation natural killer cell activation natural killer cell proliferation regulation of natural killer cell proliferation interleukin-10-mediated signaling pathway positive regulation of cell communication positive regulation of signal transduction positive regulation of receptor signaling pathway via STAT regulation of signal transduction positive regulation of receptor signaling pathway via JAK-STAT regulation of receptor signaling pathway via JAK-STAT regulation of signaling regulation of cell communication regulation of receptor signaling pathway via STAT positive regulation of signaling cellular biosynthetic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production positive regulation of macromolecule metabolic process interleukin-17 production regulation of biosynthetic process regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression regulation of interleukin-17 production biosynthetic process positive regulation of gene expression regulation of macromolecule biosynthetic process positive regulation of interleukin-17 production positive regulation of cytokine production regulation of metabolic process positive regulation of cellular biosynthetic process intracellular signal transduction regulation of type II interferon production type II interferon production positive regulation of type II interferon production cellular response to virus response to virus regulation of NK T cell proliferation positive regulation of NK T cell proliferation regulation of alpha-beta T cell activation positive regulation of alpha-beta T cell proliferation alpha-beta T cell proliferation alpha-beta T cell activation NK T cell proliferation positive regulation of alpha-beta T cell activation positive regulation of NK T cell activation regulation of alpha-beta T cell proliferation regulation of NK T cell activation NK T cell activation	extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol intracellular organelle extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol intracellular organelle cytoskeleton intracellular non-membrane-bounded organelle non-membrane-bounded organelle cell periphery extrinsic component of plasma membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane membrane plasma membrane extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane side of membrane protein-containing complex plasma membrane protein complex plasma membrane signaling receptor complex membrane protein complex interleukin-12 receptor complex receptor complex nucleus intracellular membrane-bounded organelle interleukin-23 receptor complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR000299	FERM domain	Domain
A, B	IPR016251	Tyrosine-protein kinase, non-receptor Jak/Tyk2	Family
A, B	IPR008266	Tyrosine-protein kinase, active site	Active Site
A, B	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
A, B	IPR000719	Protein kinase domain	Domain
A, B	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A, B	IPR041381	JAK1-3/TYK2, pleckstrin homology-like domain	Domain
A, B	IPR017441	Protein kinase, ATP binding site	Binding Site
A, B	IPR036860	SH2 domain superfamily	Homologous Superfamily
A, B	IPR000980	SH2 domain	Domain
A, B	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
A, B	IPR016045	Tyrosine-protein kinase, non-receptor, TYK2, N-terminal	Domain
A, B	IPR051286	Janus Kinase (JAK)	Family
A, B	IPR041046	JAK, FERM F2 lobe domain	Domain
A, B	IPR019749	Band 4.1 domain	Domain
A, B	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B	IPR041155	FERM F1 lobe ubiquitin-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P29597	rheumatoid arthritis Crohn disease primary biliary cholangitis psoriasis susceptibility to infection due to TYK2 deficiency ankylosing spondylitis cocaine abuse ulcerative colitis juvenile idiopathic arthritis cocaine dependence lymphomatoid papulosis multiple sclerosis Precursor T-Cell Lymphoblastic Leukemia-Lymphoma inflammatory bowel disease major depressive disorder rheumatoid arthritis Crohn disease primary biliary cholangitis psoriasis susceptibility to infection due to TYK2 deficiency ankylosing spondylitis cocaine abuse ulcerative colitis juvenile idiopathic arthritis cocaine dependence lymphomatoid papulosis multiple sclerosis Precursor T-Cell Lymphoblastic Leukemia-Lymphoma inflammatory bowel disease major depressive disorder oligodendroglioma autoimmune disease colorectal adenocarcinoma systemic lupus erythematosus glioblastoma ileocolitis malignant ependymoma myositis osteosarcoma astrocytic tumor primary cutaneous anaplastic large cell lymphoma pustulosis palmaris et plantaris rheumatoid factor-negative juvenile idiopathic arthritis systemic sclerosis Hashimoto thyroiditis oligoarticular juvenile idiopathic arthritis ovarian cancer atopic eczema Crohn's colitis type 1 diabetes mellitus hypothyroidism

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.