4UXA | pdb_00004uxa

Improved variant of (R)-selective manganese-dependent hydroxynitrile lyase from bacteria

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
T	d4uxat_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
S	d4uxas_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
R	d4uxar_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
Q	d4uxaq_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
P	d4uxap_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
O	d4uxao_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
N	d4uxan_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
M	d4uxam_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
L	d4uxal_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
K	d4uxak_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
J	d4uxaj_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
I	d4uxai_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
H	d4uxah_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
G	d4uxag_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
F	d4uxaf_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
E	d4uxae_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
D	d4uxad_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
C	d4uxac_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
B	d4uxab_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)
A	d4uxaa_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	automated matches	automated matches	(Granulicella tundricola ) [TaxId: 940615 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
T	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RmlC-like cupins	8089470	3001825	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
T	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaT1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
S	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaS1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
R	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaR1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
Q	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaQ1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
P	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaP1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
O	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaO1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
N	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaN1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
M	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaM1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
L	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaL1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
K	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaK1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
J	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaJ1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
I	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaI1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
H	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaH1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
G	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaG1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
F	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaF1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
E	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaE1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
D	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaD1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
C	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaC1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
B	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaB1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)
A	PPR_1, PPR_2, PPR_long, TPR_24	e4uxaA1	A: alpha arrays	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: PPR_1, PPR_2, PPR_long, TPR_24	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
T	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
S	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
R	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
Q	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
P	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
O	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
N	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
M	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
L	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
K	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
J	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
I	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
H	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
G	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
F	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
E	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
D	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
C	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
B	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
A	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF07883	Cupin domain (Cupin_2)	Cupin domain	This family represents the conserved barrel domain of the 'cupin' superfamily [1] ('cupa' is the Latin term for a small barrel).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	CUPIN 2 CONSERVED BARREL DOMAIN PROTEIN	mandelonitrile lyase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR047263	Hydroxynitrile lyase-like, cupin domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR013096	Cupin 2, conserved barrel	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.