4UJE | pdb_00004uje

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

External Resource: Annotation

Domain Annotation: ECOD Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth BB]	P22_portal	e4ujeBB1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
G [auth BC]	Pre-SET	e4ujeBC3	A: alpha arrays	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: Pre-SET	ECOD (v295)
G [auth BC]	KAsynt_C_assoc	e4ujeBC1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: KAsynt_C_assoc	ECOD (v295)
H [auth BD]	P22_portal	e4ujeBD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
I [auth BE]	P22_portal	e4ujeBE1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
J [auth BF]	P22_portal	e4ujeBF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
K [auth BG]	P22_portal	e4ujeBG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
M [auth BI]	P22_portal	e4ujeBI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
O [auth BK]	P22_portal	e4ujeBK1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
Q [auth BM]	P22_portal	e4ujeBM1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
R [auth BN]	P22_portal	e4ujeBN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
S [auth BO]	P22_portal	e4ujeBO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
U [auth BQ]	Cellulase	e4ujeBQ1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: Cellulase	ECOD (v295)
V [auth BR]	Ribosomal_L19e_C	e4ujeBR1	A: alpha arrays	X: Ribosomal protein L19 (L19e) C-terminal domain	H: Ribosomal protein L19 (L19e) C-terminal domain	T: Ribosomal protein L19 (L19e) C-terminal domain	F: Ribosomal_L19e_C	ECOD (v295)
W [auth BS]	FlaF_Ig-like	e4ujeBS1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: FlaF_Ig-like	ECOD (v295)
Y [auth BU]	P22_portal	e4ujeBU1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
Z [auth BV]	P22_portal	e4ujeBV1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
AA [auth BW]	P22_portal	e4ujeBW1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
CA [auth BY]	P22_portal	e4ujeBY1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
DA [auth BZ]	P22_portal	e4ujeBZ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
GA [auth Bc]	P22_portal	e4ujeBc1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
HA [auth Bd]	P22_portal	e4ujeBd1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
IA [auth Be]	KAsynt_C_assoc	e4ujeBe1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: KAsynt_C_assoc	ECOD (v295)
LA [auth CA]	P22_portal	e4ujeCA1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
MA [auth CB]	P22_portal	e4ujeCB1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
NA [auth CC]	Phosphodiest, Metalloenzyme	e4ujeCC1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Phosphodiest, Metalloenzyme	ECOD (v295)
OA [auth CD]	P22_portal	e4ujeCD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
PA [auth CE]	FlaF_Ig-like	e4ujeCE1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: FlaF_Ig-like	ECOD (v295)
QA [auth CF]	P22_portal	e4ujeCF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
SA [auth CH]	P22_portal	e4ujeCH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
TA [auth CI]	P22_portal	e4ujeCI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
UA [auth CJ]	P22_portal	e4ujeCJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
WA [auth CM]	P22_portal	e4ujeCM1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
XA [auth CN]	P22_portal	e4ujeCN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
ZA [auth CP]	P22_portal	e4ujeCP1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
AB [auth CQ]	P22_portal	e4ujeCQ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
BB [auth CR]	Ribosomal_L19e_C	e4ujeCR1	A: alpha arrays	X: Ribosomal protein L19 (L19e) C-terminal domain	H: Ribosomal protein L19 (L19e) C-terminal domain	T: Ribosomal protein L19 (L19e) C-terminal domain	F: Ribosomal_L19e_C	ECOD (v295)
CB [auth CS]	P22_portal	e4ujeCS1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
DB [auth CT]	P22_portal	e4ujeCT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
EB [auth CU]	KAsynt_C_assoc	e4ujeCU1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: KAsynt_C_assoc	ECOD (v295)
KB [auth Ca]	CE2_N	e4ujeCa1	A: alpha arrays	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: CE2_N	ECOD (v295)
LB [auth Cb]	V_ATPase_I	e4ujeCb1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: V_ATPase_I	ECOD (v295)
NB [auth Cd]	P22_portal	e4ujeCd1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
PB [auth Cf]	P22_portal	e4ujeCf1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
SB [auth Ci]	KAsynt_C_assoc	e4ujeCi1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: KAsynt_C_assoc	ECOD (v295)
UB [auth Ck]	V_ATPase_I	e4ujeCk1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: V_ATPase_I	ECOD (v295)
VB [auth Cl]	P22_portal	e4ujeCl1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
WB [auth Cm]	P22_portal	e4ujeCm1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
XB [auth Cn]	P22_portal	e4ujeCn1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
BC [auth Cu]	P22_portal	e4ujeCu1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
AC [auth Ct]	Mtrc-MtrF_II-IV_dom	e4ujeCt1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: Mtrc-MtrF_II-IV_dom	ECOD (v295)
ZB [auth Cp]	P22_portal	e4ujeCp1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
YB [auth Co]	P22_portal	e4ujeCo1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
TB [auth Cj]	P22_portal	e4ujeCj1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
RB [auth Ch]	P22_portal	e4ujeCh1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
QB [auth Cg]	V_ATPase_I	e4ujeCg1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: V_ATPase_I	ECOD (v295)
OB [auth Ce]	P22_portal	e4ujeCe1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
MB [auth Cc]	P22_portal	e4ujeCc1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
JB [auth CZ]	P22_portal	e4ujeCZ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
IB [auth CY]	P22_portal	e4ujeCY1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
HB [auth CX]	P22_portal	e4ujeCX1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
GB [auth CW]	P22_portal	e4ujeCW1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
FB [auth CV]	P22_portal	e4ujeCV1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
YA [auth CO]	P22_portal	e4ujeCO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
E [auth BA]	FlaF_Ig-like	e4ujeBA1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: FlaF_Ig-like	ECOD (v295)
VA [auth CL]	V_ATPase_I	e4ujeCL1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: V_ATPase_I	ECOD (v295)
RA [auth CG]	P22_portal	e4ujeCG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
KA [auth Bg]	P22_portal	e4ujeBg1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
JA [auth Bf]	P22_portal	e4ujeBf1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
FA [auth Bb]	P22_portal	e4ujeBb1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
EA [auth Ba]	P22_portal	e4ujeBa1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
BA [auth BX]	P22_portal	e4ujeBX1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
X [auth BT]	P22_portal	e4ujeBT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
T [auth BP]	Ribosomal_S17,Ribosomal_S17_N	e4ujeBP1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Ribosomal_S17,Ribosomal_S17_N	ECOD (v295)
P [auth BL]	Ribosomal_S17,Ribosomal_S17_N	e4ujeBL1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Ribosomal_S17,Ribosomal_S17_N	ECOD (v295)
N [auth BJ]	FlaF_Ig-like	e4ujeBJ1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: FlaF_Ig-like	ECOD (v295)
L [auth BH]	P22_portal	e4ujeBH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.