4TXV
Crystal structure of the mixed disulfide intermediate between thioredoxin-like TlpAs(C110S) and subunit II of cytochrome c oxidase CoxBPD (C233S)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4txva_ | Alpha and beta proteins (a/b) | Thioredoxin fold | Thioredoxin-like | Glutathione peroxidase-like | automated matches | (Bradyrhizobium diazoefficiens USDA 110 ) [TaxId: 224911 ], | SCOPe (2.08) |
C | d4txvc_ | Alpha and beta proteins (a/b) | Thioredoxin fold | Thioredoxin-like | Glutathione peroxidase-like | automated matches | (Bradyrhizobium diazoefficiens USDA 110 ) [TaxId: 224911 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Thioredoxin-like | 8057700 | 3000031 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Thioredoxin-like | 8057700 | 3000031 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cupredoxins | 8075784 | 3000886 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Cupredoxins | 8075784 | 3000886 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | AhpC-TSA_4 | e4txvA1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: AhpC-TSA_4 | ECOD (1.6) |
C | AhpC-TSA_4 | e4txvC1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: AhpC-TSA_4 | ECOD (1.6) |
B | COX2 | e4txvB1 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: COX2 | ECOD (1.6) |
D | COX2 | e4txvD1 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: COX2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (4.3.0) |
C | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (4.3.0) |
B | 2.60.40.420 | Mainly Beta | Sandwich | Immunoglobulin-like | Cupredoxins - blue copper proteins | CATH (4.3.0) |
D | 2.60.40.420 | Mainly Beta | Sandwich | Immunoglobulin-like | Cupredoxins - blue copper proteins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08534 | Redoxin (Redoxin) | Redoxin | This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. | Domain | |
PF00116 | Cytochrome C oxidase subunit II, periplasmic domain (COX2) | Cytochrome C oxidase subunit II, periplasmic domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050455 | Thiol Peroxidase Tpx Subfamily | Family | |
IPR017937 | Thioredoxin, conserved site | Conserved Site | |
IPR013766 | Thioredoxin domain | Domain | |
IPR013740 | Redoxin | Domain | |
IPR036249 | Thioredoxin-like superfamily | Homologous Superfamily | |
IPR011759 | Cytochrome C oxidase subunit II, transmembrane domain | Domain | |
IPR036257 | Cytochrome C oxidase subunit II, transmembrane domain superfamily | Homologous Superfamily | |
IPR034210 | Cytochrome c oxidase subunit 2, C-terminal | Domain | |
IPR045187 | Cytochrome c/quinol oxidase subunit II | Family | |
IPR002429 | Cytochrome c oxidase subunit II-like C-terminal | Domain | |
IPR008972 | Cupredoxin | Homologous Superfamily | |
IPR001505 | Copper centre Cu(A) | Binding Site | |
IPR014222 | Cytochrome c oxidase, subunit II | Domain |