4RM1
The crystal structure of Y333Q mutant pyridoxal-dependent decarboxylase from Sphaerobacter thermophilus DSM 20745
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | PLP-dependent transferases | 8097566 | 3000954 | SCOP2B (2021-05-27) |
B [auth A] | SCOP2B Superfamily | PLP-dependent transferases | 8097566 | 3000954 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | PLP-dependent transferases | 8097566 | 3000954 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | PLP-dependent transferases | 8097566 | 3000954 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | F_UNCLASSIFIED | e4rm1B1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: F_UNCLASSIFIED | ECOD (1.6) |
A [auth B] | PF00282 | e4rm1B2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00282 | ECOD (1.6) |
B [auth A] | F_UNCLASSIFIED | e4rm1A1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth A] | PF00282 | e4rm1A2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00282 | ECOD (1.6) |
C | F_UNCLASSIFIED | e4rm1C1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF00282 | e4rm1C2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00282 | ECOD (1.6) |
D | F_UNCLASSIFIED | e4rm1D1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF00282 | e4rm1D2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00282 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.90.1150.170 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) | |
A [auth B] | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
B [auth A] | 3.90.1150.170 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) | |
B [auth A] | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
C | 3.90.1150.170 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) | |
C | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
D | 3.90.1150.170 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) | |
D | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A], C, D | PF00282 | Pyridoxal-dependent decarboxylase conserved domain (Pyridoxal_deC) | Pyridoxal-dependent decarboxylase conserved domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B], B [auth A], C, D | Pyridoxal-dependent decarboxylase |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A], C, D | IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily |
A [auth B], B [auth A], C, D | IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily |
A [auth B], B [auth A], C, D | IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily |
A [auth B], B [auth A], C, D | IPR002129 | Pyridoxal phosphate-dependent decarboxylase | Family |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
A [auth B], B [auth A], C, D | LLP | Parent Component: LYS :  AA0119 :  N6-pyridoxal phosphate-L-lysine MOD:00128 |