4RIZ
The crystal structure of Y333Q mutant pyridoxal-dependent decarboxylase from Sphaerobacter thermophilus dsm 20745
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PLP-dependent transferases | 8097566 | 3000954 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | PLP-dependent transferases | 8097566 | 3000954 | SCOP2B (2021-05-27) |
C | SCOP2 Family | Pyridoxal-dependent decarboxylase | 8097565 | 4003328 | SCOP2 (2021-05-27) |
C | SCOP2 Superfamily | PLP-dependent transferases | 8097566 | 3000954 | SCOP2 (2021-05-27) |
D | SCOP2B Superfamily | PLP-dependent transferases | 8097566 | 3000954 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e4rizA2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00282 | e4rizA1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00282 | ECOD (1.6) |
B | F_UNCLASSIFIED | e4rizB1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF00282 | e4rizB2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00282 | ECOD (1.6) |
C | F_UNCLASSIFIED | e4rizC1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF00282 | e4rizC2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00282 | ECOD (1.6) |
D | F_UNCLASSIFIED | e4rizD1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF00282 | e4rizD2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00282 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.1150.170 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) | |
A | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
B | 3.90.1150.170 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) | |
B | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
C | 3.90.1150.170 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) | |
C | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
D | 3.90.1150.170 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) | |
D | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Pyridoxal-dependent decarboxylase |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily | |
IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily | |
IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily | |
IPR002129 | Pyridoxal phosphate-dependent decarboxylase | Family |