4QZE
Mouse Tdt, F401A mutant, in complex with a DSB substrate, C-G base pair
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4qzea1 | All alpha proteins | SAM domain-like | DNA polymerase beta, N-terminal domain-like | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A | d4qzea2 | All alpha proteins | SAM domain-like | PsbU/PolX domain-like | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A | d4qzea3 | Alpha and beta proteins (a+b) | Nucleotidyltransferase | Nucleotidyltransferase | DNA polymerase beta-like | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PsbU/PolX domain-like | 8042122 | 3000893 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DNA polymerase beta, N-terminal domain-like | 8037165 | 3000524 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleotidyltransferase-like | 8042123 | 3000129 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF10391 | e4qzeA2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF10391 | ECOD (1.6) |
A | PF14716 | e4qzeA1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF14716 | ECOD (1.6) |
A | PF14791,PF14792 | e4qzeA3 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: PF14791,PF14792 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.150.110 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 1.10.150.20 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 3.30.460.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (4.3.0) |
A | 3.30.210.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14716 | Helix-hairpin-helix domain (HHH_8) | Helix-hairpin-helix domain | - | Domain | |
PF14791 | DNA polymerase beta thumb (DNA_pol_B_thumb) | DNA polymerase beta thumb | - | Family | |
PF10391 | Fingers domain of DNA polymerase lambda (DNA_pol_lambd_f) | Fingers domain of DNA polymerase lambda | DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. DNA_pol_lambd_f is the centr ... | Domain | |
PF01909 | Nucleotidyltransferase domain (NTP_transf_2) | Nucleotidyltransferase domain | Members of this family belong to a large family of nucleotidyltransferases [1]. This family includes kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTa ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037160 | DNA polymerase, thumb domain superfamily | Homologous Superfamily | |
IPR019843 | DNA polymerase family X, binding site | Binding Site | |
IPR001726 | DNA nucleotidylexotransferase (TdT) / DNA-directed DNA/RNA polymerase mu | Family | |
IPR029398 | DNA polymerase beta, thumb domain | Domain | |
IPR043519 | Nucleotidyltransferase superfamily | Homologous Superfamily | |
IPR001357 | BRCT domain | Domain | |
IPR027421 | DNA polymerase lambda lyase domain superfamily | Homologous Superfamily | |
IPR036420 | BRCT domain superfamily | Homologous Superfamily | |
IPR027292 | DNA nucleotidylexotransferase (TdT) | Family | |
IPR022312 | DNA polymerase family X | Family | |
IPR010996 | DNA polymerase beta-like, N-terminal domain | Domain | |
IPR018944 | DNA polymerase lambda, fingers domain | Domain | |
IPR002934 | Polymerase, nucleotidyl transferase domain | Domain | |
IPR002054 | DNA-directed DNA polymerase X | Domain |