4Q0H
Deinococcus radiodurans BphP PAS-GAF
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4q0ha2 | Alpha and beta proteins (a+b) | Profilin-like | GAF domain-like | GAF domain | Bacteriophytochrome BphP | (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], | SCOPe (2.08) |
A | d4q0ha1 | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | BphP N-terminal domain-like | Bacteriophytochrome BphP | (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], | SCOPe (2.08) |
A | d4q0ha4 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], | SCOPe (2.08) |
A | d4q0ha3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01590 | e4q0hA1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF01590 | ECOD (1.6) |
A | PF08446 | e4q0hA2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF08446 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
A | 3.30.450.40 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | GAF domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01590 | GAF domain (GAF) | GAF domain | This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyse ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regul ... | Domain | |
PF08446 | PAS fold (PAS_2) | PAS fold | The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [4]. The PAS fold appears in archaea, eubacteria and eukarya. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013515 | Phytochrome, central region | Domain | |
IPR004358 | Signal transduction histidine kinase-related protein, C-terminal | Domain | |
IPR036097 | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily | Homologous Superfamily | |
IPR043150 | Phytochrome, PHY domain superfamily | Homologous Superfamily | |
IPR036890 | Histidine kinase/HSP90-like ATPase superfamily | Homologous Superfamily | |
IPR013654 | PAS fold-2 | Domain | |
IPR035965 | PAS domain superfamily | Homologous Superfamily | |
IPR003594 | Histidine kinase/HSP90-like ATPase domain | Domain | |
IPR005467 | Histidine kinase domain | Domain | |
IPR003018 | GAF domain | Domain | |
IPR029016 | GAF-like domain superfamily | Homologous Superfamily | |
IPR052545 | Light-responsive regulatory protein | Family | |
IPR016132 | Phytochrome chromophore attachment domain | Domain |