4P2A
Structure of mouse VPS26A bound to rat SNX27 PDZ domain
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d4p2ab1 | All beta proteins | PDZ domain-like | PDZ domain-like | automated matches | automated matches | Rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
B | d4p2ab2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Vps26-like | 8044659 | 4004065 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Arrestin/Vps26-like | 8051910 | 3002071 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Arrestin/Vps26-like | 8051911 | 3002071 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | PDZ domain-like | 8062276 | 3000388 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Vps26_C | e4p2aA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Vps26_C | ECOD (1.6) |
A | Vps26_N | e4p2aA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Vps26_N | ECOD (1.6) |
B | PDZ | e4p2aB1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.640 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
B | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03643 | Vacuolar protein sorting-associated protein 26 (Vps26) | Vacuolar protein sorting-associated protein 26 | - | Family | |
PF00595 | PDZ domain (PDZ) | PDZ domain | PDZ domains are found in diverse signaling proteins. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR028934 | Vacuolar protein sorting protein 26 related | Family | |
IPR014752 | Arrestin-like, C-terminal | Homologous Superfamily | |
IPR037835 | SNX27, RA domain | Domain | |
IPR001683 | Phox homology | Domain | |
IPR000159 | Ras-associating domain | Domain | |
IPR037831 | SNX17/27/31-like | Family | |
IPR037827 | SNX27, atypical FERM-like domain | Domain | |
IPR037833 | SNX27, PX domain | Domain | |
IPR036034 | PDZ superfamily | Homologous Superfamily | |
IPR036871 | PX domain superfamily | Homologous Superfamily | |
IPR001478 | PDZ domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |