4NQK
Structure of an Ubiquitin complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | DEATH domain | 8092819 | 3000069 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | DEATH domain | 8092818 | 3000069 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | DEATH domain | 8092819 | 3000069 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | DEATH domain | 8092818 | 3000069 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | DEATH domain | 8092819 | 3000069 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | DEATH domain | 8092818 | 3000069 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | DEATH domain | 8092819 | 3000069 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | DEATH domain | 8092818 | 3000069 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2021-05-27) |
G | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2021-05-27) |
H | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2021-05-27) |
I | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2021-05-27) |
J | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF16739 | e4nqkA2 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF16739 | ECOD (1.6) |
B | PF16739 | e4nqkB1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF16739 | ECOD (1.6) |
C | PF16739 | e4nqkC2 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF16739 | ECOD (1.6) |
D | PF16739 | e4nqkD2 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF16739 | ECOD (1.6) |
E | PF00240 | e4nqkE1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
F | PF00240 | e4nqkF1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
G | PF00240 | e4nqkG1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
H | PF00240 | e4nqkH1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
I | PF00240 | e4nqkI1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
J | PF00240 | e4nqkJ1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.533.10 | Mainly Alpha | Orthogonal Bundle | Death Domain, Fas | Death Domain, Fas | CATH (4.3.0) |
B | 1.10.533.10 | Mainly Alpha | Orthogonal Bundle | Death Domain, Fas | Death Domain, Fas | CATH (4.3.0) |
C | 1.10.533.10 | Mainly Alpha | Orthogonal Bundle | Death Domain, Fas | Death Domain, Fas | CATH (4.3.0) |
D | 1.10.533.10 | Mainly Alpha | Orthogonal Bundle | Death Domain, Fas | Death Domain, Fas | CATH (4.3.0) |
E | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
F | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
H | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
J | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16739 | Caspase recruitment domain (CARD_2) | Caspase recruitment domain | In the probable ATP-dependent RNA helicase DDX58 this CARD domain is found near the N-terminus and interacts with the C-terminal domain [1]. | Domain | |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR021673 | RIG-I-like receptor, C-terminal regulatory domain | Domain | |
IPR042145 | RIG-I, CARD domain repeat 2 | Domain | |
IPR011545 | DEAD/DEAH box helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR038557 | RIG-I-like receptor, C-terminal domain superfamily | Homologous Superfamily | |
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR041204 | RIG-I-like receptor, C-terminal | Domain | |
IPR031964 | Caspase recruitment domain | Domain | |
IPR011029 | Death-like domain superfamily | Homologous Superfamily | |
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR019956 | Ubiquitin domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |