4NMF

Crystal structure of proline utilization A (PutA) from Geobacter sulfurreducens PCA inactivated by N-propargylglycine and complexed with menadione bisulfite


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APro_dhe4nmfA3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Pro_dhECOD (1.6)
AAldedh_2nde4nmfA5 A: a/b three-layered sandwichesX: ALDH-like (From Topology)H: ALDH-like (From Topology)T: ALDH-likeF: Aldedh_2ndECOD (1.6)
AAldedh_1st_1e4nmfA4 A: a/b three-layered sandwichesX: ALDH-like (From Topology)H: ALDH-like (From Topology)T: ALDH-likeF: Aldedh_1st_1ECOD (1.6)
AEUF08776e4nmfA2 A: extended segmentsX: N-terminal domain of bifunctional PutA protein (From Topology)H: N-terminal domain of bifunctional PutA protein (From Topology)T: N-terminal domain of bifunctional PutA proteinF: EUF08776ECOD (1.6)
BPro_dhe4nmfB3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Pro_dhECOD (1.6)
BAldedh_2nde4nmfB5 A: a/b three-layered sandwichesX: ALDH-like (From Topology)H: ALDH-like (From Topology)T: ALDH-likeF: Aldedh_2ndECOD (1.6)
BAldedh_1st_1e4nmfB4 A: a/b three-layered sandwichesX: ALDH-like (From Topology)H: ALDH-like (From Topology)T: ALDH-likeF: Aldedh_1st_1ECOD (1.6)
BEUF08776e4nmfB2 A: extended segmentsX: N-terminal domain of bifunctional PutA protein (From Topology)H: N-terminal domain of bifunctional PutA protein (From Topology)T: N-terminal domain of bifunctional PutA proteinF: EUF08776ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00171Aldehyde dehydrogenase family (Aldedh)Aldehyde dehydrogenase family- Family
A, B
PF01619Proline dehydrogenase (Pro_dh)Proline dehydrogenase- Family
A, B
PF18083Proline utilization A N-terminal domain (PutA_N)Proline utilization A N-terminal domainThis domain is found in Proline utilization A (PutA) proteins present in Geobacter sulfurreducens. PutA are bifunctional peripheral membrane flavoenzymes that catalyze the oxidation of l-proline to l-glutamate and couple the oxidation of imported pro ...This domain is found in Proline utilization A (PutA) proteins present in Geobacter sulfurreducens. PutA are bifunctional peripheral membrane flavoenzymes that catalyze the oxidation of l-proline to l-glutamate and couple the oxidation of imported proline imported to the reduction of membrane-associated quinones. This domain is located at the N-terminus and is referred to as the alpha domain. The hydrocarbon tail of Zwittergent 3-12 binds to an exposed hydrophobic patch of the alpha domain which contains aromatic and nonpolar residues. The domain may be involved in membrane association [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Proline dehydrogenase and Delta-1-pyrroline-5-carboxylate dehydrogenase