4M8Q
Ontogeny of recognition specificity and functionality for the anti-HIV neutralizing antibody 4E10
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth H] | V-set_8 | e4m8qH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
A | V-set_8 | e4m8qA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B | V-set | e4m8qB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
E [auth L] | V-set | e4m8qL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C | PTS_EIIA_2 | e4m8qC1 | A: a+b three layers | X: Phoshotransferase/anion transport protein (From Topology) | H: Phoshotransferase/anion transport protein (From Topology) | T: Phoshotransferase/anion transport protein | F: PTS_EIIA_2 | ECOD (1.6) |
F [auth S] | PTS_EIIA_2 | e4m8qS1 | A: a+b three layers | X: Phoshotransferase/anion transport protein (From Topology) | H: Phoshotransferase/anion transport protein (From Topology) | T: Phoshotransferase/anion transport protein | F: PTS_EIIA_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
E [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C | 3.40.930.10 | Alpha Beta | 3-Layer(aba) Sandwich | Mannitol-specific EII | Chain A | CATH (4.3.0) |
F [auth S] | 3.40.930.10 | Alpha Beta | 3-Layer(aba) Sandwich | Mannitol-specific EII | Chain A | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A, D [auth H] | GEP 1 | VH | Homo sapiens (human) | IGHV1-69*06, IGHV1-69*14, IGHJ4*01, IGHJ4*02, IGHJ4*03 | V-DOMAIN VH | IG | FV-HEAVY_KAPPA | IMGT (202434-0) |
B, E [auth L] | GEP 1 | V-KAPPA | Homo sapiens (human) | IGKV3-20*01, IGKJ1*01 | V-DOMAIN V-KAPPA | IG | FV-HEAVY_KAPPA | IMGT (202434-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A, D [auth H] | Heavy Chain | IGHV1 | - | 4e10 epitope scaffold t117 | SAbDab (2024-08-30) |
B, E [auth L] | Light Chain | IGKV3 | Kappa | 4e10 epitope scaffold t117 | SAbDab (2024-08-30) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B, E [auth L] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B, E [auth L] | IPR050150 | Immunoglobulin Variable Light Chain | Family |
B, E [auth L] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
B, E [auth L] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
B, E [auth L] | IPR013106 | Immunoglobulin V-set domain | Domain |
B, E [auth L] | IPR003599 | Immunoglobulin domain subtype | Domain |
B, E [auth L] | IPR007110 | Immunoglobulin-like domain | Domain |