4LRS
Crystal and solution structures of the bifunctional enzyme (Aldolase/Aldehyde dehydrogenase) from Thermomonospora curvata, reveal a cofactor-binding domain motion during NAD+ and CoA accommodation whithin the shared cofactor-binding site
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4lrsa2 | All alpha proteins | RuvA C-terminal domain-like | post-HMGL domain-like | automated matches | automated matches | (Thermomonospora curvata DSM 43183 ) [TaxId: 471852 ], | SCOPe (2.08) |
A | d4lrsa1 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | automated matches | automated matches | (Thermomonospora curvata DSM 43183 ) [TaxId: 471852 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | HMGL-like | 8097559 | 4000416 | SCOP2 (2022-06-29) |
A | SCOP2 Family | DmpG/LeuA communication domain-like | 8101075 | 4003687 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Aldolase | 8097560 | 3000445 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | post-HMGL domain-like | 8101077 | 3001285 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | GAPDH-like | 8085565 | 3000043 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DmpG_comm | e4lrsA2 | A: alpha arrays | X: RuvA-C | H: post-HMGL domain-like (From Topology) | T: post-HMGL domain-like | F: DmpG_comm | ECOD (1.6) |
A | HMGL-like_1 | e4lrsA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: HMGL-like_1 | ECOD (1.6) |
B | AcetDehyd-dimer | e4lrsB1 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology) | T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | F: AcetDehyd-dimer | ECOD (1.6) |
B | Semialdhyde_dh | e4lrsB2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Semialdhyde_dh | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
A | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
B | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
B | 3.30.360.10 | Alpha Beta | 2-Layer Sandwich | Dihydrodipicolinate Reductase | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07836 | DmpG-like communication domain (DmpG_comm) | DmpG-like communication domain | This domain is found towards the C-terminal region of various aldolase enzymes. It consists of five alpha-helices, four of which form an antiparallel helical bundle that plugs the C-terminus of the N-terminal TIM barrel domain [1]. The communicatio ... | Domain | |
PF00682 | HMGL-like (HMGL-like) | HMGL-like | This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase. | Domain | |
PF01118 | Semialdehyde dehydrogenase, NAD binding domain (Semialdhyde_dh) | Semialdehyde dehydrogenase, NAD binding domain | This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase | Domain | |
PF09290 | Prokaryotic acetaldehyde dehydrogenase, dimerisation (AcetDehyd-dimer) | Prokaryotic acetaldehyde dehydrogenase, dimerisation | Members of this family are found in prokaryotic acetaldehyde dehydrogenase (acylating), and adopt a structure consisting of an alpha-beta-alpha-beta(3) core. They mediate dimerisation of the protein [1]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012425 | DmpG-like communication | Domain | |
IPR035685 | 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Domain | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily | |
IPR050073 | Alpha-IPM synthase/homocitrate synthase | Family | |
IPR017629 | 4-hydroxy-2-oxovalerate aldolase | Family | |
IPR000891 | Pyruvate carboxyltransferase | Domain | |
IPR036291 | NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR015426 | Acetaldehyde dehydrogenase, C-terminal | Domain | |
IPR003361 | Acetaldehyde dehydrogenase | Family | |
IPR000534 | Semialdehyde dehydrogenase, NAD-binding | Domain |