4L5G
Crystal structure of Thermus thermophilus CarD
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02559 | e4l5gA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02559 | ECOD (1.6) |
A | PF21095 | e4l5gA2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF21095 | ECOD (1.6) |
B | PF02559 | e4l5gB1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02559 | ECOD (1.6) |
B | PF21095 | e4l5gB2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF21095 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.10.170 | Mainly Beta | Beta Barrel | Thrombin, subunit H | CATH (4.3.0) | |
A | 1.20.58.1290 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
B | 2.40.10.170 | Mainly Beta | Beta Barrel | Thrombin, subunit H | CATH (4.3.0) | |
B | 1.20.58.1290 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02559 | CarD-like/TRCF RID domain (CarD_TRCF_RID) | CarD-like/TRCF RID domain | This is the RNA polymerase interacting domain (RID) of transcription-repair-coupling factor (TRCF), CarD and CarD homologue in Myxococcus xanthus, called CdnL. In Myxococcus xanthus, CdnL is a protein required for the activation of light- and starvat ... | Domain | |
PF21095 | CarD, C-terminal domain (CarD_C) | CarD, C-terminal domain | This entry represents the C-terminal helical domain of CarD from Mycobacterium tuberculosis, a RNAP-binding protein that regulates transcription and essential processes [1-3]. This domain binds DNA in a non-specific manner [4]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR042215 | CarD-like, C-terminal domain | Homologous Superfamily | |
IPR048792 | CarD, C-terminal domain | Domain | |
IPR036101 | CarD-like/TRCF, RNAP-interacting domain superfamily | Homologous Superfamily | |
IPR003711 | CarD-like/TRCF, RNAP-interacting domain | Domain |