4KNG
Crystal structure of human LGR5-RSPO1-RNF43
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth M] | d4kngm_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Growth factor receptor domain | Growth factor receptor domain | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D [auth P] | d4kngp_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Growth factor receptor domain | Growth factor receptor domain | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth M] | SCOP2B Superfamily | Growth factor receptor domain-like | 8052293 | 3000398 | SCOP2B (2022-06-29) |
D [auth P] | SCOP2B Superfamily | Growth factor receptor domain-like | 8052293 | 3000398 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | LRR_8_3 | e4kngA5 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_3 | ECOD (1.6) |
B | LRR_8_3 | e4kngB4 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_3 | ECOD (1.6) |
C [auth M] | Furin-like_2 | e4kngM2 | A: few secondary structure elements | X: EGF-like | H: Growth factor receptor domain (From Topology) | T: Growth factor receptor domain | F: Furin-like_2 | ECOD (1.6) |
D [auth P] | Furin-like_2 | e4kngP2 | A: few secondary structure elements | X: EGF-like | H: Growth factor receptor domain (From Topology) | T: Growth factor receptor domain | F: Furin-like_2 | ECOD (1.6) |
E | PA_like | e4kngE1 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: PA_like | ECOD (1.6) |
F | PA_like | e4kngF1 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: PA_like | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
B | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
C [auth M] | 2.10.220.10 | Mainly Beta | Ribbon | Hormone Receptor, Insulin-like Growth Factor Receptor 1 | Chain A domain 2 | CATH (4.3.0) |
D [auth P] | 2.10.220.10 | Mainly Beta | Ribbon | Hormone Receptor, Insulin-like Growth Factor Receptor 1 | Chain A domain 2 | CATH (4.3.0) |
E | 3.50.30.30 | Alpha Beta | 3-Layer(bba) Sandwich | Glucose Oxidase | domain 1 | CATH (4.3.0) |
F | 3.50.30.30 | Alpha Beta | 3-Layer(bba) Sandwich | Glucose Oxidase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13855 | Leucine rich repeat (LRR_8) | Leucine rich repeat | - | Repeat | |
PF01462 | Leucine rich repeat N-terminal domain (LRRNT) | Leucine rich repeat N-terminal domain | - | Family | |
PF12799 | Leucine Rich repeats (2 copies) (LRR_4) | Leucine Rich repeats (2 copies) | - | Repeat | |
C [auth M], D [auth P] | PF15913 | Furin-like repeat, cysteine-rich (Furin-like_2) | Furin-like repeat, cysteine-rich | The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation. | Domain |
PF18212 | ZNRF-3 Ectodomain (ZNRF_3_ecto) | ZNRF-3 Ectodomain | This domain is found in ZNRF-3 protein present in Danio rerio. ZNRF-3 is a transmembrane E3 ubiquitin ligase that antagonizes Wnt signalling, the signalling system used to mediate Rspo protein actions. ZNFR3 and RNF43, alongside the Rspo proteins, ha ... | Domain |