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 4KDE | pdb_00004kde

Crystal Structure of the Apo Form of Thermus thermophilus Malate Dehydrogenase

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd4kdeb1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains LDH N-terminal domain-like Malate dehydrogenase (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Bd4kdeb2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like Lactate & malate dehydrogenases, C-terminal domain Malate dehydrogenase (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Bd4kdeb3 Artifacts Tags Tags Tags C-terminal Tags (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Ad4kdea1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains LDH N-terminal domain-like Malate dehydrogenase (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Ad4kdea2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like Lactate & malate dehydrogenases, C-terminal domain Malate dehydrogenase (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Ad4kdea3 Artifacts Tags Tags Tags C-terminal Tags (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyLDH/MDH/AglA-like 8057332 3000039 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLDH/MDH/AglA-like 8057332 3000039 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BToxin_3e4kdeB2 A: alpha arraysX: DEATH domainH: omega toxin-relatedT: Scorpion toxin-likeF: Toxin_3ECOD (v295.2)
BLdh_1_Ce4kdeB3 A: alpha arraysX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF: Ldh_1_CECOD (v295.2)
AAcylphosphatasee4kdeA2 A: alpha arraysX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: AcylphosphataseECOD (v295.2)
ALdh_1_Ce4kdeA3 A: alpha arraysX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF: Ldh_1_CECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Malate dehydrogenase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR001236Lactate/malate dehydrogenase, N-terminalDomain
A, B
IPR010945Malate dehydrogenase, type 2Family
A, B
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A, B
IPR015955Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminalHomologous Superfamily
A, B
IPR001252Malate dehydrogenase, active siteActive Site
A, B
IPR022383Lactate/malate dehydrogenase, C-terminalDomain
A, B
IPR001557L-lactate/malate dehydrogenaseFamily