Crystal structure of human Fab PGT123, a broadly reactive and potent HIV-1 neutralizing antibody
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d4jy6a1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
| C | d4jy6c1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
| B | d4jy6b_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
| D | d4jy6d_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Ig_2 | e4jy6A3 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: Ig_2 | ECOD (v294.1) |
| C | Ig_2 | e4jy6C3 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: Ig_2 | ECOD (v294.1) |
| B | PGM_PMM_IV | e4jy6B1 | A: a/b three-layered sandwiches | X: all-alpha NTP pyrophosphatases | H: all-alpha NTP pyrophosphatases | T: MazG-related | F: PGM_PMM_IV | ECOD (v294.1) |
| D | e4jy6D1 | A: a/b three-layered sandwiches | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| PGT123 mAb, anti-gp120 [HIV-1], broadly neutralizing | L-LAMBDA | Homo sapiens (human) | IGLV3-21*01, IGLJ3*02, IGLC3*03 | V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA | IG | FAB-GAMMA-1_LAMBDA | IMGT (202615-0) | |
| PGT123 mAb, anti-gp120 [HIV-1], broadly neutralizing | VH-CH1 | Homo sapiens (human) | IGHV4-59*01, IGHV4-59*08, IGHJ3*01, IGHG1*03 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_LAMBDA | IMGT (202615-0) |
