4J0E
Crystal structure of 3-hydroxyacyl-CoA dehydrogenase from Caenorhadbitis elegans in P1 space group
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4j0ea2 | All alpha proteins | 6-phosphogluconate dehydrogenase C-terminal domain-like | 6-phosphogluconate dehydrogenase C-terminal domain-like | automated matches | automated matches | nematode (Caenorhabditis elegans ) [TaxId: 6239 ], | SCOPe (2.08) |
A | d4j0ea1 | Alpha and beta proteins (a/b) | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | automated matches | automated matches | nematode (Caenorhabditis elegans ) [TaxId: 6239 ], | SCOPe (2.08) |
B | d4j0eb2 | All alpha proteins | 6-phosphogluconate dehydrogenase C-terminal domain-like | 6-phosphogluconate dehydrogenase C-terminal domain-like | automated matches | automated matches | nematode (Caenorhabditis elegans ) [TaxId: 6239 ], | SCOPe (2.08) |
B | d4j0eb1 | Alpha and beta proteins (a/b) | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | automated matches | automated matches | nematode (Caenorhabditis elegans ) [TaxId: 6239 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | 3HCDH | e4j0eA1 | A: alpha arrays | X: 6-phosphogluconate dehydrogenase C-terminal domain-like (From Topology) | H: 6-phosphogluconate dehydrogenase C-terminal domain-like (From Topology) | T: 6-phosphogluconate dehydrogenase C-terminal domain-like | F: 3HCDH | ECOD (1.6) |
A | 3HCDH_N | e4j0eA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: 3HCDH_N | ECOD (1.6) |
B | 3HCDH | e4j0eB1 | A: alpha arrays | X: 6-phosphogluconate dehydrogenase C-terminal domain-like (From Topology) | H: 6-phosphogluconate dehydrogenase C-terminal domain-like (From Topology) | T: 6-phosphogluconate dehydrogenase C-terminal domain-like | F: 3HCDH | ECOD (1.6) |
B | 3HCDH_N | e4j0eB2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: 3HCDH_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
A | 1.10.1040.10 | Mainly Alpha | Orthogonal Bundle | N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase | domain 2 | CATH (4.3.0) |
B | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
B | 1.10.1040.10 | Mainly Alpha | Orthogonal Bundle | N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02737 | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain (3HCDH_N) | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | This family also includes lambda crystallin. | Domain | |
PF00725 | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain (3HCDH) | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain | This family also includes lambda crystallin. Some proteins include two copies of this domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR052242 | Mitochondrial 3-hydroxyacyl-CoA dehydrogenase | Family | |
IPR008927 | 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily | Homologous Superfamily | |
IPR006108 | 3-hydroxyacyl-CoA dehydrogenase, C-terminal | Domain | |
IPR036291 | NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR013328 | 6-phosphogluconate dehydrogenase, domain 2 | Homologous Superfamily | |
IPR006180 | 3-hydroxyacyl-CoA dehydrogenase, conserved site | Conserved Site | |
IPR006176 | 3-hydroxyacyl-CoA dehydrogenase, NAD binding | Domain | |
IPR022694 | 3-hydroxyacyl-CoA dehydrogenase | Family |