4IJJ
Structure of transcription factor DksA2 from Pseudomonas aeruginosa
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | dksA_1 | e4ijjA1 | A: alpha bundles | X: Long alpha-hairpin | H: DnaK suppressor protein DksA, alpha-hairpin domain (From Topology) | T: DnaK suppressor protein DksA, alpha-hairpin domain | F: dksA_1 | ECOD (1.6) |
A | UNK_F_TYPE | e4ijjA2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: UNK_F_TYPE | ECOD (1.6) |
B | dksA_1 | e4ijjB2 | A: alpha bundles | X: Long alpha-hairpin | H: DnaK suppressor protein DksA, alpha-hairpin domain (From Topology) | T: DnaK suppressor protein DksA, alpha-hairpin domain | F: dksA_1 | ECOD (1.6) |
B | zf-dskA_traR | e4ijjB1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: zf-dskA_traR | ECOD (1.6) |
C | dksA_1 | e4ijjC1 | A: alpha bundles | X: Long alpha-hairpin | H: DnaK suppressor protein DksA, alpha-hairpin domain (From Topology) | T: DnaK suppressor protein DksA, alpha-hairpin domain | F: dksA_1 | ECOD (1.6) |
C | UNK_F_TYPE | e4ijjC2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.910 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | DksA, coiled-coil domain | CATH (4.3.0) |
B | 1.20.120.910 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | DksA, coiled-coil domain | CATH (4.3.0) |
C | 1.20.120.910 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | DksA, coiled-coil domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21157 | DnaK suppressor protein DksA, N-terminal domain (DksA_N) | DnaK suppressor protein DksA, N-terminal domain | DksA is a transcription factor that directly binds RNA polymerase and controls the bacteria response to stress and starvation. DksA is all helical and comprises a coiled-coil (CC) and globular domains [1-4]. This is the N-terminal domain which extend ... | Domain | |
PF01258 | Prokaryotic dksA/traR C4-type zinc finger (zf-dskA_traR) | Prokaryotic dksA/traR C4-type zinc finger | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037187 | DksA, N-terminal domain superfamily | Homologous Superfamily | |
IPR000962 | Zinc finger, DksA/TraR C4-type | Domain | |
IPR048489 | DnaK suppressor protein DksA, N-terminal domain | Domain | |
IPR012784 | RNA polymerase-binding transcription factor DksA | Family |