Annotations: 4IC6

Crystal structure of Deg8

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	RecA	e4ic6C1	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: RecA	ECOD (v295.2)
B	PGM_PMM_IV	e4ic6B1	A: alpha arrays	X: Major vault protein (MVP) structural repeat domain	H: Major vault protein (MVP) structural repeat domain	T: Major vault protein (MVP) structural repeat domain	F: PGM_PMM_IV	ECOD (v295.2)
B	AmoC	e4ic6B2	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: AmoC	ECOD (v295.2)
A	Glutaredoxin	e4ic6A1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c	T: Cytochrome c	F: Glutaredoxin	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)
C	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
B	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)
B	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
A	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)
A	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF13180	PDZ domain (PDZ_2)	PDZ domain		Domain
A, B, C	PF13365	Trypsin-like peptidase domain (Trypsin_2)	Trypsin-like peptidase domain	This family includes trypsin-like peptidase domains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Protease Do-like 8, chloroplastic	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity serine hydrolase activity serine-type peptidase activity serine-type endopeptidase activity endopeptidase activity	photosynthesis photosynthesis, light reaction photosystem II repair photosynthesis, light harvesting primary metabolic process generation of precursor metabolites and energy protein repair metabolic process cellular process protein metabolic process macromolecule metabolic process proteolysis	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle intracellular membraneless organelle plastid thylakoid plastid thylakoid lumen chloroplast thylakoid lumen chloroplast thylakoid membraneless organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle intracellular membraneless organelle plastid thylakoid plastid thylakoid lumen chloroplast thylakoid lumen chloroplast thylakoid membraneless organelle thylakoid lumen thylakoid chloroplast nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A, B, C	IPR001940	Peptidase S1C	Family
A, B, C	IPR036034	PDZ superfamily	Homologous Superfamily
A, B, C	IPR051201	Chloroplastic and Bacterial Serine Proteases	Family
A, B, C	IPR001478	PDZ domain	Domain
A, B, C	IPR039382	Protease Do-like 1/8, PDZ domain	Domain
A, B, C	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.