4HGA
Structure of the variant histone H3.3-H4 heterodimer in complex with its chaperone DAXX
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d4hgab_ | All alpha proteins | Histone-fold | Histone-fold | Nucleosome core histones | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d4hgac_ | All alpha proteins | Histone-fold | Histone-fold | Nucleosome core histones | Histone H4 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DAXX_histone_binding | e4hgaA1 | A: alpha bundles | X: Death domain-associated protein 6 histone binding domain (From Topology) | H: Death domain-associated protein 6 histone binding domain (From Topology) | T: Death domain-associated protein 6 histone binding domain | F: DAXX_histone_binding | ECOD (1.6) |
B | Histone | e4hgaB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
C | Histone_1 | e4hgaC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.58.2170 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
B | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
C | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20920 | Death domain-associated protein 6, histone binding domain (DAXX_hist_bd) | Death domain-associated protein 6, histone binding domain | This domain is found in the mammalian Death domain-associated protein 6 (DAXX) and in similar proteins from animals. DAXX is a transcription corepressor and a histone chaperone that shows specificity for the conserved histone H3.3. This entry represe ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR046378 | Daxx, histone-binding domain | Domain | |
IPR031333 | Daxx, N-terminal Rassf1C-interacting domain | Domain | |
IPR038298 | Daxx, N-terminal domain superfamily | Homologous Superfamily | |
IPR046426 | Daxx, histone-binding domain superfamily | Homologous Superfamily | |
IPR000164 | Histone H3/CENP-A | Family | |
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR007125 | Histone H2A/H2B/H3 | Domain | |
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR035425 | CENP-T/Histone H4, histone fold | Domain | |
IPR001951 | Histone H4 | Family | |
IPR019809 | Histone H4, conserved site | Conserved Site | |
IPR004823 | TATA box binding protein associated factor (TAF), histone-like fold domain | Domain |