4GCZ
Structure of a blue-light photoreceptor
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HisKA | e4gczA6 | A: alpha duplicates or obligate multimers | X: ROP-like | H: Homodimeric domain of signal transducing histidine kinase (From Topology) | T: Homodimeric domain of signal transducing histidine kinase | F: HisKA | ECOD (1.6) |
A | HATPase_c | e4gczA1 | A: a+b two layers | X: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like | H: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology) | T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | F: HATPase_c | ECOD (1.6) |
A | PAS | e4gczA5 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS | ECOD (1.6) |
B | HisKA | e4gczB3 | A: alpha duplicates or obligate multimers | X: ROP-like | H: Homodimeric domain of signal transducing histidine kinase (From Topology) | T: Homodimeric domain of signal transducing histidine kinase | F: HisKA | ECOD (1.6) |
B | HATPase_c | e4gczB2 | A: a+b two layers | X: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like | H: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology) | T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | F: HATPase_c | ECOD (1.6) |
B | PAS | e4gczB1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
A | 6.10.250.2580 | Special | Helix non-globular | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
A | 1.10.287.130 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | CATH (4.3.0) |
A | 3.30.565.10 | Alpha Beta | 2-Layer Sandwich | Heat Shock Protein 90 | Histidine kinase-like ATPase, C-terminal domain | CATH (4.3.0) |
B | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
B | 1.10.287.130 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | CATH (4.3.0) |
B | 3.30.565.10 | Alpha Beta | 2-Layer Sandwich | Heat Shock Protein 90 | Histidine kinase-like ATPase, C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13426 | PAS domain (PAS_9) | PAS domain | This domain is found in many signalling proteins in which it functions as a sensor domain. It recognises FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain | |
PF00512 | His Kinase A (phospho-acceptor) domain (HisKA) | His Kinase A (phospho-acceptor) domain | Dimerisation and phospho-acceptor domain of histidine kinases. | Domain | |
PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013767 | PAS fold | Domain | |
IPR000014 | PAS domain | Domain | |
IPR004358 | Signal transduction histidine kinase-related protein, C-terminal | Domain | |
IPR036097 | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily | Homologous Superfamily | |
IPR053564 | Sensor kinase FixL-like | Family | |
IPR036890 | Histidine kinase/HSP90-like ATPase superfamily | Homologous Superfamily | |
IPR003661 | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain | Domain | |
IPR035965 | PAS domain superfamily | Homologous Superfamily | |
IPR001610 | PAC motif | Repeat | |
IPR003594 | Histidine kinase/HSP90-like ATPase domain | Domain | |
IPR000700 | PAS-associated, C-terminal | Domain | |
IPR005467 | Histidine kinase domain | Domain | |
IPR035965 | PAS domain superfamily | Homologous Superfamily | |
IPR001610 | PAC motif | Repeat | |
IPR036513 | STAS domain superfamily | Homologous Superfamily | |
IPR000700 | PAS-associated, C-terminal | Domain | |
IPR000014 | PAS domain | Domain | |
IPR002645 | STAS domain | Domain | |
IPR051932 | Bacterial Stress Response Regulators | Family |