4FXW
Structure of phosphorylated SF1 complex with U2AF65-UHM domain
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d4fxwc1 | Alpha and beta proteins (a+b) | Ferredoxin-like | RNA-binding domain, RBD, aka RNA recognition motif (RRM) | Canonical RBD | Splicing factor U2AF 65 KDa subunit | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d4fxwc2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d4fxwa1 | Alpha and beta proteins (a+b) | Ferredoxin-like | RNA-binding domain, RBD, aka RNA recognition motif (RRM) | Canonical RBD | Splicing factor U2AF 65 KDa subunit | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d4fxwa2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | PF00076 | e4fxwC2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF00076 | ECOD (1.6) |
A | PF00076 | e4fxwA1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF00076 | ECOD (1.6) |
B | PF16275 | e4fxwB2 | A: extended segments | X: Splicing factor 1 N-terminal domain (From Topology) | H: Splicing factor 1 N-terminal domain (From Topology) | T: Splicing factor 1 N-terminal domain | F: PF16275 | ECOD (1.6) |
D | PF16275 | e4fxwD1 | A: extended segments | X: Splicing factor 1 N-terminal domain (From Topology) | H: Splicing factor 1 N-terminal domain (From Topology) | T: Splicing factor 1 N-terminal domain | F: PF16275 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
A | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006529 | U2 snRNP auxilliary factor, large subunit, splicing factor | Family | |
IPR000504 | RNA recognition motif domain | Domain | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily | |
IPR032570 | Splicing factor 1, helix-hairpin domain | Domain | |
IPR004087 | K Homology domain | Domain | |
IPR001878 | Zinc finger, CCHC-type | Domain | |
IPR036612 | K Homology domain, type 1 superfamily | Homologous Superfamily | |
IPR045071 | KH domain-containing BBP-like | Family | |
IPR047086 | Splicing factor 1, helix-hairpin domain superfamily | Homologous Superfamily | |
IPR004088 | K Homology domain, type 1 | Domain |