4F9D
Structure of Escherichia coli PgaB 42-655 in complex with nickel
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF14883 | e4f9dA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF14883 | ECOD (1.6) |
A | PF01522 | e4f9dA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: Glycoside hydrolase/deacetylase (From Topology) | T: Glycoside hydrolase/deacetylase | F: PF01522 | ECOD (1.6) |
B | PF14883 | e4f9dB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF14883 | ECOD (1.6) |
B | PF01522 | e4f9dB3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: Glycoside hydrolase/deacetylase (From Topology) | T: Glycoside hydrolase/deacetylase | F: PF01522 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.370 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycoside hydrolase/deacetylase | CATH (4.3.0) |
A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
B | 3.20.20.370 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycoside hydrolase/deacetylase | CATH (4.3.0) |
B | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14883 | Hypothetical glycosyl hydrolase family 13 (GHL13) | Hypothetical glycosyl hydrolase family 13 | - | Family | |
PF01522 | Polysaccharide deacetylase (Polysacc_deac_1) | Polysaccharide deacetylase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011330 | Glycoside hydrolase/deacetylase, beta/alpha-barrel | Homologous Superfamily | |
IPR023854 | Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB | Family | |
IPR051398 | Polysaccharide Deacetylase | Family | |
IPR032772 | Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal | Domain | |
IPR002509 | NodB homology domain | Domain |