4F7U
The 6S snRNP assembly intermediate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Sm motif of small nuclear ribonucleoproteins, SNRNP | 8098845 | 4001809 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Sm-like ribonucleoproteins | 8098846 | 3000419 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8098846 | 3000419 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063478 | 3000419 | SCOP2B (2022-06-29) |
F [auth H] | SCOP2 Family | Sm motif of small nuclear ribonucleoproteins, SNRNP | 8063477 | 4001809 | SCOP2 (2022-06-29) |
F [auth H] | SCOP2 Superfamily | Sm-like ribonucleoproteins | 8063478 | 3000419 | SCOP2 (2022-06-29) |
G [auth F] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8098848 | 3000419 | SCOP2B (2022-06-29) |
H [auth I] | SCOP2 Family | Sm motif of small nuclear ribonucleoproteins, SNRNP | 8098847 | 4001809 | SCOP2 (2022-06-29) |
H [auth I] | SCOP2 Superfamily | Sm-like ribonucleoproteins | 8098848 | 3000419 | SCOP2 (2022-06-29) |
I [auth G] | SCOP2 Family | Sm motif of small nuclear ribonucleoproteins, SNRNP | 8063469 | 4001809 | SCOP2 (2022-06-29) |
I [auth G] | SCOP2 Superfamily | Sm-like ribonucleoproteins | 8063470 | 3000419 | SCOP2 (2022-06-29) |
J | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063470 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | LSM | e4f7uA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
C | LSM | e4f7uC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
B | LSM | e4f7uB2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
D | LSM | e4f7uD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
E | LSM | e4f7uE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
F [auth H] | LSM | e4f7uH2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
G [auth F] | LSM | e4f7uF1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
H [auth I] | LSM | e4f7uI1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
I [auth G] | LSM | e4f7uG1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
J | LSM | e4f7uJ2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
K [auth Q] | Voldacs | e4f7uQ1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: Voldacs | ECOD (1.6) |
L [auth P] | Voldacs | e4f7uP1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: Voldacs | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
C | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
B | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
D | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
E | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
F [auth H] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
G [auth F] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
H [auth I] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
I [auth G] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
J | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
K [auth Q] | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
L [auth P] | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain | |
PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain | |
E, F [auth H] | PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain |
G [auth F], H [auth I] | PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain |
I [auth G], J | PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain |
K [auth Q], L [auth P] | PF03517 | Regulator of volume decrease after cellular swelling (Voldacs) | Regulator of volume decrease after cellular swelling | ICln is a ubiquitously expressed multi-functional protein that plays a critical role in regulating volume decrease in cells after cellular swelling. In plants, ICln induces Cl- currents [1,4,5], thus regulating Cl- homoeostasis in eukaryotes [2,3]. S ... | Domain |