4ETZ
Crystal Structure of PelD 158-CT from Pseudomonas aeruginosa PAO1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | GAF domain-like | 8053755 | 3000080 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8053753 | 3001272 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | GAF domain-like | 8053755 | 3000080 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8053753 | 3001272 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PelD_GGDEF | e4etzA6 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PelD_GGDEF | ECOD (1.6) |
A | GAF_3 | e4etzA5 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: GAF_3 | ECOD (1.6) |
B | PelD_GGDEF | e4etzB6 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PelD_GGDEF | ECOD (1.6) |
B | GAF_3 | e4etzB5 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: GAF_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.450.40 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | GAF domain | CATH (4.3.0) |
A | 3.30.70.2880 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
B | 3.30.450.40 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | GAF domain | CATH (4.3.0) |
B | 3.30.70.2880 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13185 | GAF domain (GAF_2) | GAF domain | The GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes [1,2]. The structure of a GAF domain shows that the doma ... | Domain | |
PF16963 | PelD GGDEF domain (PelD_GGDEF) | PelD GGDEF domain | This degenerate GGDEF domain is found at the C-terminus of PelD, a membrane-bound c-di-GMP-specific receptor. It contains an RXXD motif resembling the allosteric inhibition site found in diguanylate cyclases . In PelD this RXXD motif binds to dimeric ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR031583 | PelD, GGDEF domain | Domain | |
IPR003018 | GAF domain | Domain | |
IPR029016 | GAF-like domain superfamily | Homologous Superfamily | |
IPR038367 | PelD, GGDEF domain superfamily | Homologous Superfamily |