4ERM
Crystal structure of the dATP inhibited E. coli class Ia ribonucleotide reductase complex at 4 Angstroms resolution
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | PFL-like glycyl radical enzymes | 8043875 | 3001069 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | R1 subunit of ribonucleotide reductase, N-terminal domain | 8038325 | 3000927 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | PFL-like glycyl radical enzymes | 8043875 | 3001069 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | R1 subunit of ribonucleotide reductase, N-terminal domain | 8038325 | 3000927 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PFL-like glycyl radical enzymes | 8043875 | 3001069 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | R1 subunit of ribonucleotide reductase, N-terminal domain | 8038325 | 3000927 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | PFL-like glycyl radical enzymes | 8043875 | 3001069 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | R1 subunit of ribonucleotide reductase, N-terminal domain | 8038325 | 3000927 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ferritin-like | 8032952 | 3001658 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ferritin-like | 8032952 | 3001658 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ferritin-like | 8032952 | 3001658 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ferritin-like | 8032952 | 3001658 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | ATP-cone_1 | e4ermC4 | A: alpha arrays | X: RuvA-C | H: ATP cone (From Topology) | T: ATP cone | F: ATP-cone_1 | ECOD (1.6) |
C | Ribonuc_red_lgN | e4ermC3 | A: alpha arrays | X: Alpha helical domain of ribonucleotide reductases (From Topology) | H: Alpha helical domain of ribonucleotide reductases (From Topology) | T: Alpha helical domain of ribonucleotide reductases | F: Ribonuc_red_lgN | ECOD (1.6) |
C | Ribonuc_red_lgC | e4ermC2 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: Ribonuc_red_lgC | ECOD (1.6) |
A | ATP-cone_1 | e4ermA3 | A: alpha arrays | X: RuvA-C | H: ATP cone (From Topology) | T: ATP cone | F: ATP-cone_1 | ECOD (1.6) |
A | Ribonuc_red_lgN | e4ermA4 | A: alpha arrays | X: Alpha helical domain of ribonucleotide reductases (From Topology) | H: Alpha helical domain of ribonucleotide reductases (From Topology) | T: Alpha helical domain of ribonucleotide reductases | F: Ribonuc_red_lgN | ECOD (1.6) |
A | Ribonuc_red_lgC | e4ermA2 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: Ribonuc_red_lgC | ECOD (1.6) |
B | ATP-cone_1 | e4ermB3 | A: alpha arrays | X: RuvA-C | H: ATP cone (From Topology) | T: ATP cone | F: ATP-cone_1 | ECOD (1.6) |
B | Ribonuc_red_lgN | e4ermB4 | A: alpha arrays | X: Alpha helical domain of ribonucleotide reductases (From Topology) | H: Alpha helical domain of ribonucleotide reductases (From Topology) | T: Alpha helical domain of ribonucleotide reductases | F: Ribonuc_red_lgN | ECOD (1.6) |
B | Ribonuc_red_lgC | e4ermB2 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: Ribonuc_red_lgC | ECOD (1.6) |
D | ATP-cone_1 | e4ermD1 | A: alpha arrays | X: RuvA-C | H: ATP cone (From Topology) | T: ATP cone | F: ATP-cone_1 | ECOD (1.6) |
D | Ribonuc_red_lgN | e4ermD3 | A: alpha arrays | X: Alpha helical domain of ribonucleotide reductases (From Topology) | H: Alpha helical domain of ribonucleotide reductases (From Topology) | T: Alpha helical domain of ribonucleotide reductases | F: Ribonuc_red_lgN | ECOD (1.6) |
D | Ribonuc_red_lgC | e4ermD2 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: Ribonuc_red_lgC | ECOD (1.6) |
F | Ribonuc_red_sm | e4ermF1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribonuc_red_sm | ECOD (1.6) |
G | Ribonuc_red_sm | e4ermG1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribonuc_red_sm | ECOD (1.6) |
E | Ribonuc_red_sm | e4ermE1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribonuc_red_sm | ECOD (1.6) |
H | Ribonuc_red_sm | e4ermH1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribonuc_red_sm | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02867 | Ribonucleotide reductase, barrel domain (Ribonuc_red_lgC) | Ribonucleotide reductase, barrel domain | - | Family | |
PF00317 | Ribonucleotide reductase, all-alpha domain (Ribonuc_red_lgN) | Ribonucleotide reductase, all-alpha domain | - | Domain | |
PF03477 | ATP cone domain (ATP-cone) | ATP cone domain | - | Domain | |
PF00268 | Ribonucleotide reductase, small chain (Ribonuc_red_sm) | Ribonucleotide reductase, small chain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013509 | Ribonucleotide reductase large subunit, N-terminal | Domain | |
IPR005144 | ATP-cone domain | Domain | |
IPR008926 | Ribonucleotide reductase R1 subunit, N-terminal | Homologous Superfamily | |
IPR013346 | Ribonucleotide reductase, class I, alpha subunit, C-terminal | Domain | |
IPR000788 | Ribonucleotide reductase large subunit, C-terminal | Domain | |
IPR039718 | Ribonucleoside-diphosphate reductase large subunit | Family | |
IPR033909 | Ribonucleotide reductase small subunit | Family | |
IPR012348 | Ribonucleotide reductase-like | Homologous Superfamily | |
IPR009078 | Ferritin-like superfamily | Homologous Superfamily | |
IPR000358 | Ribonucleotide reductase small subunit family | Family | |
IPR030475 | Ribonucleotide reductase small subunit, acitve site | Active Site |