Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPesticin receptor binding domain-like 8092867 3002635 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLysozyme-like 8092865 3001879 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLysozyme-like 8092865 3001879 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPesticin receptor binding domain-like 8092867 3002635 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APesticin_RBe4epfA2 A: a+b two layersX: Pesticin N-terminal domain (From Topology)H: Pesticin N-terminal domain (From Topology)T: Pesticin N-terminal domainF: Pesticin_RBECOD (1.6)
APhage_lysozyme_1e4epfA1 A: a+b complex topologyX: Lysozyme-like (From Homology)H: Lysozyme-likeT: Lysozyme-likeF: Phage_lysozyme_1ECOD (1.6)
BPesticin_RBe4epfB2 A: a+b two layersX: Pesticin N-terminal domain (From Topology)H: Pesticin N-terminal domain (From Topology)T: Pesticin N-terminal domainF: Pesticin_RBECOD (1.6)
BPhage_lysozyme_1e4epfB1 A: a+b complex topologyX: Lysozyme-like (From Homology)H: Lysozyme-likeT: Lysozyme-likeF: Phage_lysozyme_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.530.40 Mainly Alpha Orthogonal Bundle Lysozyme CATH (4.3.0)
B1.10.530.40 Mainly Alpha Orthogonal Bundle Lysozyme CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF16754Bacterial toxin homologue of phage lysozyme, C-term (Pesticin)Bacterial toxin homologue of phage lysozyme, C-termThis the C-terminal activator domain of pesticin, a hydrolase enzyme secreted by Yersinia pestis and other Gammaproteobacteria to kill related bacteria occupying the same ecological niche. It is referred to as a bacteriocin and it leads to the hydrol ...This the C-terminal activator domain of pesticin, a hydrolase enzyme secreted by Yersinia pestis and other Gammaproteobacteria to kill related bacteria occupying the same ecological niche. It is referred to as a bacteriocin and it leads to the hydrolysis of peptidoglycan. Its immunity protein is Pim. Pesticin carries an elongated N-terminal translocation domain, an intermediate receptor binding domain, and a C-terminal activity domain with structural analogy to lysozyme homologues. The full-length protein is toxic to bacteria when taken up to the target site via the outer or the inner membrane. The receptor domain is necessary for the close contact with the outer membrane; the N-terminal is a type of translocational, TonB box; the C-terminal domain is the death-delivering domain [1].
Domain
A, B
PF21613Pesticin, receptor binding domain (Pesticin_RB)Pesticin, receptor binding domainThis domain is found at the N-terminal end of Pesticin from Yersinia pestis (Pst). Pst is a toxin that kills related bacteria of the same niche as Y.pestis. It is organised into three domains: an N-terminal translocation domain, the intermediate rece ...This domain is found at the N-terminal end of Pesticin from Yersinia pestis (Pst). Pst is a toxin that kills related bacteria of the same niche as Y.pestis. It is organised into three domains: an N-terminal translocation domain, the intermediate receptor binding domain (RB, this entry), and a C-terminal activity domain (Pfam:PF16754). This domain shows a beta-sheet of seven anti-parallel beta-strands together with three helices. It is essential for the intimate contact with the outer membrane protein receptor [1,2].
Domain