4EMZ
HIV-1 Nef in complex with MHC-I cytoplasmic domain and Mu1 adaptin subunit of AP1 adaptor (second domain)
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | d4emza_ | All beta proteins | Common fold of diphtheria toxin/transcription factors/cytochrome f | Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
F [auth M] | d4emzm_ | All beta proteins | Common fold of diphtheria toxin/transcription factors/cytochrome f | Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth A] | SCOP2B Superfamily | mu adaptin domain-like | 8083652 | 3000810 | SCOP2B (2022-06-29) |
F [auth M] | SCOP2B Superfamily | mu adaptin domain-like | 8083652 | 3000810 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | F-protein | e4emzC2 | A: a+b three layers | X: Regulatory factor Nef (From Topology) | H: Regulatory factor Nef (From Topology) | T: Regulatory factor Nef | F: F-protein | ECOD (1.6) |
D [auth B] | F-protein | e4emzB2 | A: a+b three layers | X: Regulatory factor Nef (From Topology) | H: Regulatory factor Nef (From Topology) | T: Regulatory factor Nef | F: F-protein | ECOD (1.6) |
E [auth A] | Adap_comp_sub_2nd | e4emzA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_2nd | ECOD (1.6) |
E [auth A] | Adap_comp_sub_1st | e4emzA4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_1st | ECOD (1.6) |
F [auth M] | Adap_comp_sub_2nd | e4emzM3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_2nd | ECOD (1.6) |
F [auth M] | Adap_comp_sub_1st | e4emzM4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 3.30.62.10 | Alpha Beta | 2-Layer Sandwich | Nef Regulatory Factor | Nef Regulatory Factor | CATH (4.3.0) |
D [auth B] | 3.30.62.10 | Alpha Beta | 2-Layer Sandwich | Nef Regulatory Factor | Nef Regulatory Factor | CATH (4.3.0) |
E [auth A] | 2.60.40.1170 | Mainly Beta | Sandwich | Immunoglobulin-like | Mu homology domain, subdomain B | CATH (4.3.0) |
F [auth M] | 2.60.40.1170 | Mainly Beta | Sandwich | Immunoglobulin-like | Mu homology domain, subdomain B | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth D], C [auth E] | PF06623 | MHC_I C-terminus (MHC_I_C) | MHC_I C-terminus | - | Family |