Annotations: 4E38

Crystal structure of probable keto-hydroxyglutarate-aldolase from Vibrionales bacterium SWAT-3 (Target EFI-502156)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4e38a1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	automated matches	automated matches	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)
A	d4e38a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)
C	d4e38c1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	automated matches	automated matches	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)
C	d4e38c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)
B	d4e38b1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	automated matches	automated matches	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)
B	d4e38b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	p450	e4e38A1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: p450	ECOD (v295.2)
C	SNase	e4e38C1	A: alpha arrays	X: Alpha helical domain of ribonucleotide reductases	H: Alpha helical domain of ribonucleotide reductases	T: Alpha helical domain of ribonucleotide reductases	F: SNase	ECOD (v295.2)
B	FtsJ	e4e38B1	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: FtsJ	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
C	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
B	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase	2-dehydro-3-deoxy-phosphogluconate aldolase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR031338	KDPG/KHG aldolase, active site 2	Active Site
A, B, C	IPR000887	KDPG/KHG aldolase	Family
A, B, C	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B, C	IPR031337	KDPG/KHG aldolase, active site 1	Active Site

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.