Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyGAF domain-like8053754 3000080 SCOP2B (2021-05-27)
ASCOP2B SuperfamilyNucleotide cyclase/DNA polymerase palm domain-like8053752 3001272 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF16963e4dn0A6 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PF16963ECOD (1.6)
APF13185e4dn0A5 A: a+b three layersX: Profilin-likeH: sensor domains (From Topology)T: sensor domainsF: PF13185ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.450.40 Alpha Beta 2-Layer Sandwich Beta-Lactamase GAF domainCATH (4.3.0)
A3.30.70.2880 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF13185GAF domain (GAF_2)GAF domainThe GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes [1,2]. The structure of a GAF domain shows that the doma ...The GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes [1,2]. The structure of a GAF domain shows that the domain shares a similar fold with the PAS domain [3]. This domain can bind O2, CO and NO (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Domain
PF16963PelD GGDEF domain (PelD_GGDEF)PelD GGDEF domainThis degenerate GGDEF domain is found at the C-terminus of PelD, a membrane-bound c-di-GMP-specific receptor. It contains an RXXD motif resembling the allosteric inhibition site found in diguanylate cyclases . In PelD this RXXD motif binds to dimeric ...This degenerate GGDEF domain is found at the C-terminus of PelD, a membrane-bound c-di-GMP-specific receptor. It contains an RXXD motif resembling the allosteric inhibition site found in diguanylate cyclases . In PelD this RXXD motif binds to dimeric c-di-GMP [1].
Domain

InterPro: Protein Family Classification InterPro Database Homepage