4DK9
Crystal Structure of MBD4 Catalytic Domain Bound to Abasic DNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | d4dk9a_ | All alpha proteins | DNA-glycosylase | DNA-glycosylase | Mismatch glycosylase | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | DNA-glycosylase | 8089628 | 3000905 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | HhH-GPD | e4dk9A1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: DNA-glycosylase | F: HhH-GPD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 1.10.340.30 | Mainly Alpha | Orthogonal Bundle | Endonuclease III | domain 1 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A] | IPR001739 | Methyl-CpG DNA binding | Domain |
C [auth A] | IPR045138 | Methyl-CpG binding protein MeCP2/MBD4 | Family |
C [auth A] | IPR017352 | Methyl-CpG-binding domain protein 4 | Family |
C [auth A] | IPR011257 | DNA glycosylase | Homologous Superfamily |
C [auth A] | IPR016177 | DNA-binding domain superfamily | Homologous Superfamily |