4DJD
Crystal structure of folate-free corrinoid iron-sulfur protein (CFeSP) in complex with its methyltransferase (MeTr)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4djda_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Dihydropteroate synthetase-like | Methyltetrahydrofolate-utiluzing methyltransferases | automated matches | (Moorella thermoacetica ) [TaxId: 1525 ], | SCOPe (2.08) |
B | d4djdb_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Dihydropteroate synthetase-like | Methyltetrahydrofolate-utiluzing methyltransferases | automated matches | (Moorella thermoacetica ) [TaxId: 1525 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | Dihydropteroate synthetase-like | 8089873 | 3000643 | SCOP2B (2021-05-27) |
F | SCOP2 Family | CdhD-like | 8051754 | 4007502 | SCOP2 (2021-05-27) |
F | SCOP2 Superfamily | Dihydropteroate synthetase-like | 8089873 | 3000643 | SCOP2 (2021-05-27) |
A | SCOP2B Superfamily | Dihydropteroate synthetase-like | 8043870 | 3000643 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Dihydropteroate synthetase-like | 8043870 | 3000643 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | AcsC Fe-S domain-like | 8089862 | 3002395 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Dihydropteroate synthetase-like | 8089870 | 3000643 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | AcsC C-terminal domain-like | 8089872 | 3002396 | SCOP2B (2021-05-27) |
E | SCOP2 Family | CdhD-like | 8051753 | 4007502 | SCOP2 (2021-05-27) |
E | SCOP2 Family | AcsC Fe-S domain-like | 8045246 | 4004371 | SCOP2 (2021-05-27) |
E | SCOP2 Family | AcsC cobalamin-binding domain | 8089871 | 4007687 | SCOP2 (2021-05-27) |
E | SCOP2 Superfamily | Dihydropteroate synthetase-like | 8089870 | 3000643 | SCOP2 (2021-05-27) |
E | SCOP2 Superfamily | AcsC Fe-S domain-like | 8089862 | 3002395 | SCOP2 (2021-05-27) |
E | SCOP2 Superfamily | AcsC C-terminal domain-like | 8089872 | 3002396 | SCOP2 (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | PF03599 | e4djdD1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF03599 | ECOD (1.6) |
F | PF03599 | e4djdF1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF03599 | ECOD (1.6) |
A | PF00809 | e4djdA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00809 | ECOD (1.6) |
B | PF00809 | e4djdB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00809 | ECOD (1.6) |
C | PF03599 | e4djdC4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF03599 | ECOD (1.6) |
C | PF03599 | e4djdC1 | A: a/b three-layered sandwiches | X: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology) | H: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology) | T: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit | F: PF03599 | ECOD (1.6) |
C | PF04060 | e4djdC3 | A: few secondary structure elements | X: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology) | H: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology) | T: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit | F: PF04060 | ECOD (1.6) |
E | PF03599 | e4djdE4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF03599 | ECOD (1.6) |
E | PF03599 | e4djdE1 | A: a/b three-layered sandwiches | X: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology) | H: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology) | T: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit | F: PF03599 | ECOD (1.6) |
E | PF04060 | e4djdE3 | A: few secondary structure elements | X: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology) | H: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology) | T: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit | F: PF04060 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D | 3.20.20.20 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Dihydropteroate synthase-like | CATH (4.3.0) |
F | 3.20.20.20 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Dihydropteroate synthase-like | CATH (4.3.0) |
A | 3.20.20.20 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Dihydropteroate synthase-like | CATH (4.3.0) |
B | 3.20.20.20 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Dihydropteroate synthase-like | CATH (4.3.0) |
C | 3.20.20.20 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Dihydropteroate synthase-like | CATH (4.3.0) |
C | 3.40.50.11600 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
E | 3.20.20.20 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Dihydropteroate synthase-like | CATH (4.3.0) |
E | 3.40.50.11600 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03599 | CO dehydrogenase/acetyl-CoA synthase delta subunit (CdhD) | CO dehydrogenase/acetyl-CoA synthase delta subunit | - | Family | |
PF00809 | Pterin binding enzyme (Pterin_bind) | Pterin binding enzyme | This family includes a variety of pterin binding enzymes that all adopt a TIM barrel fold. The family includes dihydropteroate synthase EC:2.5.1.15 as well as a group methyltransferase enzymes including methyltetrahydrofolate, corrinoid iron-sulfur p ... | Domain | |
PF04060 | Putative Fe-S cluster (FeS) | Putative Fe-S cluster | This family includes a domain with four conserved cysteines that probably form an Fe-S redox cluster. | Domain | |
PF03599 | CO dehydrogenase/acetyl-CoA synthase delta subunit (CdhD) | CO dehydrogenase/acetyl-CoA synthase delta subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016041 | CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel | Domain | |
IPR004486 | CO dehydrogenase/acetyl-CoA synthase delta subunit | Family | |
IPR011005 | Dihydropteroate synthase-like superfamily | Homologous Superfamily | |
IPR011005 | Dihydropteroate synthase-like superfamily | Homologous Superfamily | |
IPR000489 | Pterin-binding domain | Domain | |
IPR016218 | Acetyl-CoA decarbonylase/synthase complex, gamma subunit | Family | |
IPR016041 | CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel | Domain | |
IPR007202 | 4Fe-4S domain | Domain | |
IPR011005 | Dihydropteroate synthase-like superfamily | Homologous Superfamily |