4DDT
Thermotoga maritima reverse gyrase, C2 FORM 2
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TopG2 | e4ddtA1 | A: beta barrels | X: LigT-like | H: Prokaryotic type I DNA topoisomerase beta-barrel domain (From Topology) | T: Prokaryotic type I DNA topoisomerase beta-barrel domain | F: TopG2 | ECOD (1.6) |
A | Topoisom_bac_3rd | e4ddtA6 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Topoisom_bac_3rd | ECOD (1.6) |
A | Topoisom_bac_1st | e4ddtA5 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Topoisom_bac_1st | ECOD (1.6) |
A | Helicase_C_2 | e4ddtA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Helicase_C_2 | ECOD (1.6) |
A | DEAD_3 | e4ddtA7 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD_3 | ECOD (1.6) |
A | Toprim | e4ddtA8 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: Toprim | ECOD (1.6) |
A | Zn-ribbon_8_2 | e4ddtA3 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Zn-ribbon_8_2 | ECOD (1.6) |
A | PRK09401 | e4ddtA2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PRK09401 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 3.30.56.80 | Alpha Beta | 2-Layer Sandwich | Phenylalanyl-tRNA Synthetase | Chain B, domain 1 | CATH (4.3.0) |
A | 3.40.50.140 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
A | 1.10.460.10 | Mainly Alpha | Orthogonal Bundle | Topoisomerase I | domain 2 | CATH (4.3.0) |
A | 2.60.510.20 | Mainly Beta | Sandwich | EV matrix protein fold | CATH (4.3.0) | |
A | 1.10.290.10 | Mainly Alpha | Orthogonal Bundle | Topoisomerase I | domain 4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17915 | Reverse gyrase zinc finger (zf_Rg) | Reverse gyrase zinc finger | This is the N-terminal zinc finger domain present in reverse gyrase proteins. Most reverse gyrases conserve the N-terminal zinc finger of the zinc ribbon type, pointing to a crucial function of this domain. Structure of Thermotoga maritima reverse gy ... | Domain | |
PF00270 | DEAD/DEAH box helicase (DEAD) | DEAD/DEAH box helicase | Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ... | Domain | |
PF01131 | DNA topoisomerase (Topoisom_bac) | DNA topoisomerase | - | Family | |
PF01751 | Toprim domain (Toprim) | Toprim domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013497 | DNA topoisomerase, type IA, central | Domain | |
IPR003602 | DNA topoisomerase, type IA, DNA-binding domain | Domain | |
IPR023405 | DNA topoisomerase, type IA, core domain | Homologous Superfamily | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR005736 | Reverse gyrase | Family | |
IPR003601 | DNA topoisomerase, type IA, domain 2 | Domain | |
IPR013826 | DNA topoisomerase, type IA, central region, subdomain 3 | Homologous Superfamily | |
IPR006171 | TOPRIM domain | Domain | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR034142 | Reverse gyrase, TOPRIM domain | Domain | |
IPR040569 | Reverse gyrase, zinc finger | Domain | |
IPR011545 | DEAD/DEAH box helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR013824 | DNA topoisomerase, type IA, central region, subdomain 1 | Homologous Superfamily |