4DCK
Crystal structure of the C-terminus of voltage-gated sodium channel in complex with FGF13 and CaM
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d4dckc_ | All beta proteins | beta-Trefoil | Cytokine | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d4dckb_ | All alpha proteins | EF Hand-like | EF-hand | Calmodulin-like | Calmodulin | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | FGF | e4dckC1 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: FGF | ECOD (1.6) |
A | EF-hand_7_6 | e4dckA1 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_7_6 | ECOD (1.6) |
A | IQ_like | e4dckA2 | A: extended segments | X: Voltage gated calcium channel IQ domain (From Topology) | H: Voltage gated calcium channel IQ domain (From Topology) | T: Voltage gated calcium channel IQ domain | F: IQ_like | ECOD (1.6) |
B | EF-hand_7_8 | e4dckB2 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_7_8 | ECOD (1.6) |
B | EF-hand_7_5 | e4dckB3 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_7_5 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.80.10.50 | Mainly Beta | Trefoil | Trefoil (Acidic Fibroblast Growth Factor, subunit A) | CATH (4.3.0) | |
A | 1.10.238.10 | Mainly Alpha | Orthogonal Bundle | Recoverin | domain 1 | CATH (4.3.0) |
A | 1.20.5.1190 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | iswi atpase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00167 | Fibroblast growth factor (FGF) | Fibroblast growth factor | Fibroblast growth factors are a family of proteins involved in growth and differentiation in a wide range of contexts. They are found in a wide range of organisms, from nematodes to humans [2]. Most share an internal core region of high similarity, c ... | Domain | |
PF13499 | EF-hand domain pair (EF-hand_7) | EF-hand domain pair | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008996 | Cytokine IL1/FGF | Homologous Superfamily | |
IPR002209 | Fibroblast growth factor family | Family | |
IPR010526 | Sodium ion transport-associated domain | Domain | |
IPR043203 | Voltage-gated cation channel calcium and sodium | Family | |
IPR008053 | Voltage gated sodium channel, alpha-5 subunit | Family | |
IPR024583 | Voltage-gated Na+ ion channel, cytoplasmic domain | Domain | |
IPR001696 | Voltage gated sodium channel, alpha subunit | Family | |
IPR005821 | Ion transport domain | Domain | |
IPR044564 | Voltage-gated sodium channel alpha subunit, inactivation gate | Domain | |
IPR027359 | Voltage-dependent channel domain superfamily | Homologous Superfamily | |
IPR050145 | Centrin/CML-like | Family | |
IPR002048 | EF-hand domain | Domain | |
IPR018247 | EF-Hand 1, calcium-binding site | Binding Site | |
IPR011992 | EF-hand domain pair | Homologous Superfamily |