4D1Q
Hermes transposase bound to its terminal inverted repeat
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF10683 | e4d1qA2 | A: alpha duplicates or obligate multimers | X: Hermes dimerisation domain (From Topology) | H: Hermes dimerisation domain (From Topology) | T: Hermes dimerisation domain | F: PF10683 | ECOD (1.6) |
A | PF05699 | e4d1qA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF05699 | ECOD (1.6) |
B | PF10683 | e4d1qB2 | A: alpha duplicates or obligate multimers | X: Hermes dimerisation domain (From Topology) | H: Hermes dimerisation domain (From Topology) | T: Hermes dimerisation domain | F: PF10683 | ECOD (1.6) |
B | PF05699 | e4d1qB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF05699 | ECOD (1.6) |
G | PF10683 | e4d1qG2 | A: alpha duplicates or obligate multimers | X: Hermes dimerisation domain (From Topology) | H: Hermes dimerisation domain (From Topology) | T: Hermes dimerisation domain | F: PF10683 | ECOD (1.6) |
G | PF05699 | e4d1qG1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF05699 | ECOD (1.6) |
H | PF10683 | e4d1qH1 | A: alpha duplicates or obligate multimers | X: Hermes dimerisation domain (From Topology) | H: Hermes dimerisation domain (From Topology) | T: Hermes dimerisation domain | F: PF10683 | ECOD (1.6) |
H | PF05699 | e4d1qH2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF05699 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.1070 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Zinc finger, BED domain-containing | CATH (4.2.0) |
B | 1.10.10.1070 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Zinc finger, BED domain-containing | CATH (4.2.0) |
G | 1.10.10.1070 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Zinc finger, BED domain-containing | CATH (4.2.0) |
H | 1.10.10.1070 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Zinc finger, BED domain-containing | CATH (4.2.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF10683 | Hermes transposase DNA-binding domain (DBD_Tnp_Hermes) | Hermes transposase DNA-binding domain | This domain confers specific DNA-binding on Hermes transposase [1]. | Domain | |
PF05699 | hAT family C-terminal dimerisation region (Dimer_Tnp_hAT) | hAT family C-terminal dimerisation region | This dimerisation region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerisation region forms extremely stable dimers in vitro [1]. | Domain | |