4CSF

Structural insights into Toscana virus RNA encapsidation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
O	SCOP2 Family	BueVN nucleocapsid protein-like	8047522	4005678	SCOP2 (2022-06-29)
O	SCOP2 Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2 (2022-06-29)
T	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Tenui_N	e4csfA1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
B	Tenui_N	e4csfB1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
D	Tenui_N	e4csfD1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
F	Tenui_N	e4csfF1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
G	Tenui_N	e4csfG1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
I	Tenui_N	e4csfI1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
J	Tenui_N	e4csfJ1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
K	Tenui_N	e4csfK1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
L	Tenui_N	e4csfL1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
M	Tenui_N	e4csfM1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
P	Tenui_N	e4csfP1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
Q	Tenui_N	e4csfQ1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
R	Tenui_N	e4csfR1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
S	Tenui_N	e4csfS1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
U	Tenui_N	e4csfU1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
V	Tenui_N	e4csfV1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
W	Tenui_N	e4csfW1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
H	Tenui_N	e4csfH1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
N	Tenui_N	e4csfN1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
O	Tenui_N	e4csfO1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
T	Tenui_N	e4csfT1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
C	Tenui_N	e4csfC1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
X	Tenui_N	e4csfX1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
E	Tenui_N	e4csfE1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, D, F, G A, B, D, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W	PF05733	Tenuivirus/Phlebovirus nucleocapsid protein (Tenui_N)	Tenuivirus/Phlebovirus nucleocapsid protein	-	Family
C, X	PF05733	Tenuivirus/Phlebovirus nucleocapsid protein (Tenui_N)	Tenuivirus/Phlebovirus nucleocapsid protein	-	Family
E	PF05733	Tenuivirus/Phlebovirus nucleocapsid protein (Tenui_N)	Tenuivirus/Phlebovirus nucleocapsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, D, F, G A, B, D, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W	NUCLEOPROTEIN	RNA binding binding organic cyclic compound binding nucleic acid binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part protein-containing complex ribonucleoprotein complex viral nucleocapsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus helical viral capsid
C, X	NUCLEOPROTEIN	RNA binding binding organic cyclic compound binding nucleic acid binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part protein-containing complex ribonucleoprotein complex viral nucleocapsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus helical viral capsid
E	NUCLEOPROTEIN	RNA binding binding organic cyclic compound binding nucleic acid binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part protein-containing complex ribonucleoprotein complex viral nucleocapsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus helical viral capsid
AA [auth e], BA [auth g], CA [auth i], DA [auth k], EA [auth m], AA [auth e], BA [auth g], CA [auth i], DA [auth k], EA [auth m], FA [auth o], GA [auth q], HA [auth s], IA [auth u], JA [auth w], Y [auth a], Z [auth c]	RNA (5'-R(UPGPUPGPUPUPUPCP*UP)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, D, F, G A, B, D, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W	IPR015971	Nucleocapsid, Phlebovirus	Family
A, B, D, F, G A, B, D, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family
C, X	IPR015971	Nucleocapsid, Phlebovirus	Family
C, X	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family
E	IPR015971	Nucleocapsid, Phlebovirus	Family
E	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family