4BJT
Crystal structure of the Rap1 C-terminal domain (Rap1-RCT) in complex with the Rap1 binding module of Rif1 (Rif1-RBM)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Rap1 C-terminal domain | 8046768 | 4005289 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | UBA-like | 8054004 | 3001235 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | UBA-like | 8054004 | 3001235 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | UBA-like | 8054004 | 3001235 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF11626 | e4bjtA2 | A: alpha arrays | X: Rap1 C-terminal domain (From Topology) | H: Rap1 C-terminal domain (From Topology) | T: Rap1 C-terminal domain | F: PF11626 | ECOD (1.6) |
A | PF11626 | e4bjtA1 | A: alpha arrays | X: Repressor activator protein 1 (RAP1) helical bundle domain (From Topology) | H: Repressor activator protein 1 (RAP1) helical bundle domain (From Topology) | T: Repressor activator protein 1 (RAP1) helical bundle domain | F: PF11626 | ECOD (1.6) |
B | PF11626 | e4bjtB3 | A: alpha arrays | X: Rap1 C-terminal domain (From Topology) | H: Rap1 C-terminal domain (From Topology) | T: Rap1 C-terminal domain | F: PF11626 | ECOD (1.6) |
B | PF11626 | e4bjtB4 | A: alpha arrays | X: Repressor activator protein 1 (RAP1) helical bundle domain (From Topology) | H: Repressor activator protein 1 (RAP1) helical bundle domain (From Topology) | T: Repressor activator protein 1 (RAP1) helical bundle domain | F: PF11626 | ECOD (1.6) |
C | PF11626 | e4bjtC3 | A: alpha arrays | X: Rap1 C-terminal domain (From Topology) | H: Rap1 C-terminal domain (From Topology) | T: Rap1 C-terminal domain | F: PF11626 | ECOD (1.6) |
C | PF11626 | e4bjtC4 | A: alpha arrays | X: Repressor activator protein 1 (RAP1) helical bundle domain (From Topology) | H: Repressor activator protein 1 (RAP1) helical bundle domain (From Topology) | T: Repressor activator protein 1 (RAP1) helical bundle domain | F: PF11626 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.1480 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CATH (4.3.0) | |
A | 1.10.10.2170 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
B | 1.20.120.1480 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CATH (4.3.0) | |
B | 1.10.10.2170 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
C | 1.20.120.1480 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CATH (4.3.0) | |
C | 1.10.10.2170 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11626 | TRF2-interacting telomeric protein/Rap1 - C terminal domain (Rap1_C) | TRF2-interacting telomeric protein/Rap1 - C terminal domain | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038104 | TRF2-interacting telomeric protein/Rap1, C-terminal domain superfamily | Homologous Superfamily | |
IPR017930 | Myb domain | Domain | |
IPR001357 | BRCT domain | Domain | |
IPR015280 | Rap1, DNA-binding domain | Domain | |
IPR036420 | BRCT domain superfamily | Homologous Superfamily | |
IPR009057 | Homedomain-like superfamily | Homologous Superfamily | |
IPR039595 | TE2IP/Rap1 | Family | |
IPR021661 | TRF2-interacting telomeric protein/Rap1, C-terminal | Domain | |
IPR001005 | SANT/Myb domain | Domain | |
IPR022031 | Telomere-associated protein Rif1, N-terminal | Domain |