4AQ1
Structure of the SbsB S-layer protein of Geobacillus stearothermophilus PV72p2 in complex with nanobody KB6
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d4aq1b1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | LLAMA (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
B | d4aq1b2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | LLAMA (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
D | d4aq1d1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | LLAMA (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
D | d4aq1d2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | LLAMA (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Big_2 | e4aq1A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Big_2 | ECOD (1.6) |
A | EUF07693 | e4aq1A4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: EUF07693 | ECOD (1.6) |
A | EUF07708 | e4aq1A6 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: EUF07708 | ECOD (1.6) |
A | Big_5_like | e4aq1A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Big_5_like | ECOD (1.6) |
A | EUF07681 | e4aq1A5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: EUF07681 | ECOD (1.6) |
B | V-set_12 | e4aq1B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
D | V-set_12 | e4aq1D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
C | Big_2 | e4aq1C5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Big_2 | ECOD (1.6) |
C | EUF07693 | e4aq1C2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: EUF07693 | ECOD (1.6) |
C | EUF07708 | e4aq1C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: EUF07708 | ECOD (1.6) |
C | EUF07681 | e4aq1C4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: EUF07681 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.1220 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 2.60.40.1080 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 2.60.40.3440 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 2.60.40.3450 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 2.60.40.3460 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C | 2.60.40.1080 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
C | 2.60.40.3440 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
C | 2.60.40.3450 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
C | 2.60.40.3460 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
NBKB6 | VH | Lama glama (llama) | IGHV3S1*01, IGHJ4*01 | V-DOMAIN VH | IG | (VH) | IMGT (202440-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | - | SAbDab (2024-10-11) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
SBSB PROTEIN | - | - | ||
NBKB6 | - | - | - | |
SBSB PROTEIN | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR014755 | Copper resistance protein CopC/internalin, immunoglobulin-like | Homologous Superfamily | |
IPR003343 | Bacterial Ig-like domain, group 2 | Domain | |
IPR001119 | S-layer homology domain | Domain | |
IPR014755 | Copper resistance protein CopC/internalin, immunoglobulin-like | Homologous Superfamily | |
IPR003343 | Bacterial Ig-like domain, group 2 | Domain | |
IPR001119 | S-layer homology domain | Domain |