4AEE
CRYSTAL STRUCTURE OF MALTOGENIC AMYLASE FROM S.MARINUS
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | AMPK1_CBM | e4aeeA12 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: AMPK1_CBM | ECOD (1.6) |
A | E_set_CDase_PDE_N_like | e4aeeA13 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: E_set_CDase_PDE_N_like | ECOD (1.6) |
A | Malt_amylase_C_like_3 | e4aeeA4 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Malt_amylase_C_like_3 | ECOD (1.6) |
A | Alpha-amylase | e4aeeA11 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
B | AMPK1_CBM | e4aeeB6 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: AMPK1_CBM | ECOD (1.6) |
B | E_set_CDase_PDE_N_like | e4aeeB7 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: E_set_CDase_PDE_N_like | ECOD (1.6) |
B | Malt_amylase_C_like_3 | e4aeeB8 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Malt_amylase_C_like_3 | ECOD (1.6) |
B | Alpha-amylase | e4aeeB5 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
A | 3.90.400.10 | Alpha Beta | Alpha-Beta Complex | Oligo-1,6-glucosidase | domain 2 | CATH (4.3.0) |
A | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
B | 3.90.400.10 | Alpha Beta | Alpha-Beta Complex | Oligo-1,6-glucosidase | domain 2 | CATH (4.3.0) |
B | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00128 | Alpha amylase, catalytic domain (Alpha-amylase) | Alpha amylase, catalytic domain | Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ... | Domain | |
PF22427 | Maltogenic amylase, C-terminal domain (SMMA_C) | Maltogenic amylase, C-terminal domain | This entry represents the C-terminal GHD-like domain present in Staphylothermus marinus maltogenic amylase (SMMA). SMMA is a extreme thermophile maltogenic amylase with an optimal temperature of 100 C, which hydrolyzes alpha(1-4)glycosyl linkages in ... | Domain | |
PF22426 | Maltogenic amylase, N-terminal domain (SMMA_N) | Maltogenic amylase, N-terminal domain | This entry represents the second beta-sandwich domain present in Staphylothermus marinus maltogenic amylase (SMMA). SMMA is a extreme thermophile maltogenic amylase with an optimal temperature of 100 C, which hydrolyzes alpha(1-4)glycosyl linkages in ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
ALPHA AMYLASE, CATALYTIC REGION | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006047 | Glycosyl hydrolase, family 13, catalytic domain | Domain | |
IPR045857 | Oligo-1,6-glucosidase, domain 2 | Homologous Superfamily | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily |