4A9A
Structure of Rbg1 in complex with Tma46 dfrp domain
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | 50S ribosome-binding GTPase-like | 8019361 | 4004038 | SCOP2 (2022-06-29) |
A | SCOP2 Family | RBG1 insert domain-like | 8046327 | 4005022 | SCOP2 (2022-06-29) |
A | SCOP2 Family | RBG1 N-terminal domain-like | 8056945 | 4007676 | SCOP2 (2022-06-29) |
A | SCOP2 Family | TGS domain | 8091460 | 4001813 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ras-like P-loop GTPases | 8019365 | 3002022 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8019369 | 3000100 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RBG1 N-terminal domain-like | 8056946 | 3002365 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | TGS-like | 8019362 | 3000423 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | TGS-like | 8019362 | 3000423 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8019369 | 3000100 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8019365 | 3002022 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8019365 | 3002022 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RBG1 N-terminal domain-like | 8056946 | 3002365 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DFRP-like | 8091805 | 3002545 | SCOP2B (2022-06-29) |
D | SCOP2 Family | DFRP-like | 8045747 | 4004658 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | DFRP-like | 8091805 | 3002545 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TGS | e4a9aA8 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: TGS | ECOD (1.6) |
A | MnmE_helical_2nd | e4a9aA7 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
B | TGS | e4a9aB4 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: TGS | ECOD (1.6) |
B | MnmE_helical_2nd | e4a9aB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
C | DFRP_C | e4a9aC1 | A: extended segments | X: Translation machinery-associated protein 46 DFRP domain (From Topology) | H: Translation machinery-associated protein 46 DFRP domain (From Topology) | T: Translation machinery-associated protein 46 DFRP domain | F: DFRP_C | ECOD (1.6) |
D | DFRP_C | e4a9aD2 | A: extended segments | X: Translation machinery-associated protein 46 DFRP domain (From Topology) | H: Translation machinery-associated protein 46 DFRP domain (From Topology) | T: Translation machinery-associated protein 46 DFRP domain | F: DFRP_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 6.10.140.1070 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 3.10.20.30 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Beta-grasp domain | CATH (4.3.0) |
B | 6.10.140.1070 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 3.10.20.30 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Beta-grasp domain | CATH (4.3.0) |
C | 6.20.400.10 | Special | Other non-globular | MYOD Basic-Helix-Loop-Helix Domain, subunit B | CATH (4.3.0) | |
D | 6.20.400.10 | Special | Other non-globular | MYOD Basic-Helix-Loop-Helix Domain, subunit B | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02824 | TGS domain (TGS) | TGS domain | The TGS domain is named after ThrRS, GTPase, and SpoT [1]. Interestingly, TGS domain was detected also at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete ... | Domain | |
PF01926 | 50S ribosome-binding GTPase (MMR_HSR1) | 50S ribosome-binding GTPase | - | Family | |
PF16897 | C-terminal region of MMR_HSR1 domain (MMR_HSR1_Xtn) | C-terminal region of MMR_HSR1 domain | - | Family | |
PF16543 | DRG Family Regulatory Proteins, Tma46 (DFRP_C) | DRG Family Regulatory Proteins, Tma46 | DFRP_C is a family of eukaryotic translation machinery-associated protein 46 proteins that are the binding partner for the highly conserved Developmentally Regulated GTP-binding (DRG) GTPases. Thus this family is referred to as DRG Family Regulatory ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005225 | Small GTP-binding domain | Domain | |
IPR031167 | OBG-type guanine nucleotide-binding (G) domain | Domain | |
IPR012676 | TGS-like | Homologous Superfamily | |
IPR004095 | TGS | Domain | |
IPR031662 | GTP binding protein, second domain | Domain | |
IPR006074 | GTP1/OBG, conserved site | Conserved Site | |
IPR045001 | Developmentally regulated GTP-binding protein | Family | |
IPR012675 | Beta-grasp domain superfamily | Homologous Superfamily | |
IPR006073 | GTP binding domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR036855 | Zinc finger, CCCH-type superfamily | Homologous Superfamily | |
IPR032378 | ZC3H15/TMA46 family, C-terminal | Domain | |
IPR000571 | Zinc finger, CCCH-type | Domain |