3VYQ
Crystal structure of the methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence in space group P1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3vyqa_ | Alpha and beta proteins (a+b) | DNA-binding domain | DNA-binding domain | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
D | d3vyqd_ | Alpha and beta proteins (a+b) | DNA-binding domain | DNA-binding domain | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | MBD | e3vyqA3 | A: a+b two layers | X: DNA-binding domain | H: Methyl-CpG-binding domain, MBD (From Topology) | T: Methyl-CpG-binding domain, MBD | F: MBD | ECOD (1.6) |
D | MBD | e3vyqD3 | A: a+b two layers | X: DNA-binding domain | H: Methyl-CpG-binding domain, MBD (From Topology) | T: Methyl-CpG-binding domain, MBD | F: MBD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.890.10 | Alpha Beta | 2-Layer Sandwich | Methyl-cpg-binding Protein 2 | Chain A | CATH (4.3.0) |
D | 3.30.890.10 | Alpha Beta | 2-Layer Sandwich | Methyl-cpg-binding Protein 2 | Chain A | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001739 | Methyl-CpG DNA binding | Domain | |
IPR045138 | Methyl-CpG binding protein MeCP2/MBD4 | Family | |
IPR017352 | Methyl-CpG-binding domain protein 4 | Family | |
IPR011257 | DNA glycosylase | Homologous Superfamily | |
IPR016177 | DNA-binding domain superfamily | Homologous Superfamily |