3VTI
Crystal structure of HypE-HypF complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Acylphosphatase/BLUF domain-like | 8004422 | 3000165 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Actin-like ATPases | 8004425 | 3000092 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Actin-like ATPases | 8092407 | 3000092 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | HypF zinc finger | 8019806 | 3002027 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | HypF zinc finger | 8019805 | 3002027 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | YrdC/RibB-like | 8004431 | 3000166 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | YrdC/RibB-like | 8004431 | 3000166 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | HypF zinc finger | 8019806 | 3002027 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Actin-like ATPases | 8092407 | 3000092 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Acylphosphatase/BLUF domain-like | 8004422 | 3000165 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | HypF zinc finger | 8019805 | 3002027 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Actin-like ATPases | 8004425 | 3000092 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Acylphosphatase | e3vtiA15 | A: a+b two layers | X: Alpha-beta plaits | H: Acylphosphatase-like (From Topology) | T: Acylphosphatase-like | F: Acylphosphatase | ECOD (1.6) |
A | Sua5_yciO_yrdC | e3vtiA14 | A: a+b complex topology | X: YrdC/RibB (From Topology) | H: YrdC/RibB (From Topology) | T: YrdC/RibB | F: Sua5_yciO_yrdC | ECOD (1.6) |
A | Peptidase_M22_C_1 | e3vtiA16 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Peptidase_M22_C_1 | ECOD (1.6) |
A | HypF_1 | e3vtiA17 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: HypF_1 | ECOD (1.6) |
A | zf-HYPF | e3vtiA13 | A: few secondary structure elements | X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | T: Zinc finger domain in hydrogenase maturation protein HypF | F: zf-HYPF | ECOD (1.6) |
B | Acylphosphatase | e3vtiB15 | A: a+b two layers | X: Alpha-beta plaits | H: Acylphosphatase-like (From Topology) | T: Acylphosphatase-like | F: Acylphosphatase | ECOD (1.6) |
B | Sua5_yciO_yrdC | e3vtiB14 | A: a+b complex topology | X: YrdC/RibB (From Topology) | H: YrdC/RibB (From Topology) | T: YrdC/RibB | F: Sua5_yciO_yrdC | ECOD (1.6) |
B | Peptidase_M22_C_1 | e3vtiB16 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Peptidase_M22_C_1 | ECOD (1.6) |
B | HypF_1 | e3vtiB17 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: HypF_1 | ECOD (1.6) |
B | zf-HYPF | e3vtiB13 | A: few secondary structure elements | X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | T: Zinc finger domain in hydrogenase maturation protein HypF | F: zf-HYPF | ECOD (1.6) |
D | AIRS_C | e3vtiD3 | A: a+b two layers | X: Alpha-beta plaits | H: PurM C-terminal domain-like (From Topology) | T: PurM C-terminal domain-like | F: AIRS_C | ECOD (1.6) |
D | AIRS | e3vtiD4 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: PurM N-terminal domain-like (From Topology) | T: PurM N-terminal domain-like | F: AIRS | ECOD (1.6) |
C | AIRS_C | e3vtiC3 | A: a+b two layers | X: Alpha-beta plaits | H: PurM C-terminal domain-like (From Topology) | T: PurM C-terminal domain-like | F: AIRS_C | ECOD (1.6) |
C | AIRS | e3vtiC4 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: PurM N-terminal domain-like (From Topology) | T: PurM N-terminal domain-like | F: AIRS | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22521 | Carbamoyltransferase, Kae1-like Domain, second subdomain (HypF_C_2) | Carbamoyltransferase, Kae1-like Domain, second subdomain | This domain is found at the C-terminal end of Carbamoyltransferase from Caldanaerobacter subterraneus (HypF, Swiss:Q8RDB0) and similar prokaryotic sequences. HypF is involved in the biosynthesis of the nitrile group as a precursor of the cyano groups ... | Domain | |
PF07503 | HypF finger (zf-HYPF) | HypF finger | The HypF family of proteins are involved in the maturation and regulation of hydrogenase ([1]). In the N-terminus they appear to have two Zinc finger domains, as modelled by this family. | Domain | |
PF17788 | HypF Kae1-like domain (HypF_C) | HypF Kae1-like domain | This domain is found in the HypF protein. In the structure it is one of the two subdomains of the Kae1 domain [1]. | Domain | |
PF00708 | Acylphosphatase (Acylphosphatase) | Acylphosphatase | - | Domain | |
PF01300 | Telomere recombination (Sua5_yciO_yrdC) | Telomere recombination | - | Family | |
PF02769 | AIR synthase related protein, C-terminal domain (AIRS_C) | AIR synthase related protein, C-terminal domain | This family includes Hydrogen expression/formation protein HypE Swiss:P24193, AIR synthases Swiss:P08178 EC:6.3.3.1, FGAM synthase Swiss:P35852 EC:6.3.5.3 and selenide, water dikinase Swiss:P16456 EC:2.7.9.3. The function of the C-terminal domain of ... | Domain | |
PF00586 | AIR synthase related protein, N-terminal domain (AIRS) | AIR synthase related protein, N-terminal domain | This family includes Hydrogen expression/formation protein HypE Swiss:P24193, AIR synthases Swiss:P08178 EC:6.3.3.1, FGAM synthase Swiss:P35852 EC:6.3.5.3 and selenide, water dikinase Swiss:P16456 EC:2.7.9.3. The N-terminal domain of AIR synthase fo ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR041440 | HypF, Kae1-like domain | Domain | |
IPR043129 | ATPase, nucleotide binding domain | Homologous Superfamily | |
IPR051060 | Carbamoyltransferase HypF-like | Family | |
IPR036046 | Acylphosphatase-like domain superfamily | Homologous Superfamily | |
IPR004421 | Carbamoyltransferase, HypF-type | Family | |
IPR017945 | DHBP synthase RibB-like alpha/beta domain superfamily | Homologous Superfamily | |
IPR006070 | Threonylcarbamoyl-AMP synthase-like domain | Domain | |
IPR011125 | Zinc finger, HypF-type | Domain | |
IPR017968 | Acylphosphatase, conserved site | Conserved Site | |
IPR001792 | Acylphosphatase-like domain | Domain | |
IPR036676 | PurM-like, C-terminal domain superfamily | Homologous Superfamily | |
IPR010918 | PurM-like, C-terminal domain | Domain | |
IPR016188 | PurM-like, N-terminal domain | Domain | |
IPR036921 | PurM-like, N-terminal domain superfamily | Homologous Superfamily | |
IPR011854 | Carbamoyl dehydratase HypE | Family |